RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 LMNB2Q03252 620 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 G3BP1Q13283 466 aaKnown RBP eCLIP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 RCN1Q15293 331 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ECM1Q16610 540 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 TMEM95Q3KNT9 176 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 RRP12Q5JTH9 1297 aaKnown RBP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ATF7IPQ6VMQ6 1270 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 MCM10Q7L590 875 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 DCLK2Q8N568 766 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 TEX9Q8N6V9 391 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 PAF1Q8N7H5 531 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 LILRB1Q8NHL6 650 aaPredicted RBP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 GIMAP7Q8NHV1 300 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ACMSDQ8TDX5 336 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 SLC16A10Q8TF71 515 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ANKRD49Q8WVL7 239 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 USP6NLQ92738 828 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 KIF1BPQ96EK5 621 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ASIC4Q96FT7 647 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 XAGE2Q96GT9 111 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 MRFAP1L1Q96HT8 127 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 C1orf74Q96LT6 269 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ESYT1Q9BSJ8 1104 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 THUMPD2Q9BTF0 503 aaKnown RBP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 KLF16Q9BXK1 252 aaPredicted RBP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 PHACTR1Q9C0D0 580 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 SAP130Q9H0E3 1048 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 VCX3BQ9H321 246 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 PRKRIP1Q9H875 184 aaPredicted RBP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 TPCN1Q9ULQ1 816 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 SPO11Q9Y5K1 396 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 PPP2R3BQ9Y5P8 575 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.83□□□□□ -1.48
COL3A1-205ENST00000470167 NACADO15069 1562 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 ERCC6Q03468 1493 aa5.83□□□□□ -1.48
COL3A1-205ENST00000470167 GOLGA6L19H0YKK7 550 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 MEN1O00255 615 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 FOXN3O00409 490 aaPredicted RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TBX3O15119 743 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 ORC4O43929 436 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 AKR1B10O60218 316 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 GDF9O60383 454 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 NEMFO60524 1076 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 RPSAP08865 295 aaKnown RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 HSPA1AP0DMV8 641 aaKnown RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 HSPA1BP0DMV9 641 aaKnown RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TIMP2P16035 220 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 CD9P21926 228 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 PDE6BP35913 854 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TCF7P36402 384 aaPredicted RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TRAPPC10P48553 1259 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 PEX5P50542 639 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 UBASH3AP57075 661 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 FKBP4Q02790 459 aaKnown RBP eCLIP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 ZBTB17Q13105 803 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 CLN3Q13286 438 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 RAPGEF1Q13905 1077 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 PTPN14Q15678 1187 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 CFAP58Q5T655 872 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 KIAA1614Q5VZ46 1190 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 OLFML1Q6UWY5 402 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 Q6ZVU0 165 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 MICALCLQ6ZW33 695 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 CYP4X1Q8N118 509 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 STK11IPQ8N1F8 1099 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TEX19Q8NA77 164 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 KIF18AQ8NI77 898 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TRERF1Q96PN7 1200 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 APBA2Q99767 749 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 IER2Q9BTL4 223 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 SEMA4AQ9H3S1 761 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TMEM165Q9HC07 324 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 LUC7LQ9NQ29 371 aaKnown RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 RGL1Q9NZL6 768 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 MCM8Q9UJA3 840 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 SSX2IPQ9Y2D8 614 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 HRH3Q9Y5N1 445 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 V9GY48 417 aaPredicted RBP5.82□□□□□ -1.48
COL3A1-205ENST00000470167 CCDC144AA2RUR9 1427 aa5.82□□□□□ -1.48
COL3A1-205ENST00000470167 TMEM221A6NGB7 291 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 GOLGA8AA7E2F4 631 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 M0QX08 132 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 CPLX1O14810 134 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 TTI1O43156 1089 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 SLC26A4O43511 780 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 DIAPH1O60610 1272 aaKnown RBP5.81□□□□□ -1.48
COL3A1-205ENST00000470167 PRPF40AO75400 957 aaKnown RBP5.81□□□□□ -1.48
COL3A1-205ENST00000470167 B3GALNT1O75752 331 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 TCEA3O75764 348 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 IDEP14735 1019 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 SMPD1P17405 629 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 MPSTP25325 297 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 MAPK1P28482 360 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 OAS2P29728 719 aaKnown RBP5.81□□□□□ -1.48
COL3A1-205ENST00000470167 CA8P35219 290 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 PTGIRP43119 386 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 MAGEA10P43363 369 aaPredicted RBP5.81□□□□□ -1.48
COL3A1-205ENST00000470167 PSMD7P51665 324 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 NLRP12P59046 1061 aa5.81□□□□□ -1.48
COL3A1-205ENST00000470167 PSMA6P60900 246 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms