RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 MAGEB6P1A0A0J9YX57 407 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 GNRH1P01148 92 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 PRKCZQ05513 592 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 RAB3GAP1Q15042 981 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 PRPF38BQ5VTL8 546 aaKnown RBP13.85□□□□□ -0.19
USP54-209ENST00000464635 METTL16Q86W50 562 aaKnown RBP13.85□□□□□ -0.19
USP54-209ENST00000464635 CRACR2BQ8N4Y2 399 aaPredicted RBP13.85□□□□□ -0.19
USP54-209ENST00000464635 ZNF280CQ8ND82 737 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 SMCR8Q8TEV9 937 aaPredicted RBP13.85□□□□□ -0.19
USP54-209ENST00000464635 ZNF274Q96GC6 653 aaPredicted RBP13.85□□□□□ -0.19
USP54-209ENST00000464635 GABRQQ9UN88 632 aa13.85□□□□□ -0.19
USP54-209ENST00000464635 USP17L5A8MUK1 530 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 MBD4O95243 580 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 FGRP09769 529 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 PTMSP20962 102 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 MCM5P33992 734 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 PRMT2P55345 433 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 FCGRTP55899 365 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 TRDNQ13061 729 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 MTMR2Q13614 643 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 MTFR1Q15390 333 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 SLFNL1Q499Z3 407 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 SBK1Q52WX2 424 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 NBPF11Q86T75 865 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 ANKRD13CQ8N6S4 541 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 PROCA1Q8NCQ7 364 aaPredicted RBP13.84□□□□□ -0.19
USP54-209ENST00000464635 TMEM106CQ9BVX2 250 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 NAPBQ9H115 298 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 SLKQ9H2G2 1235 aaPredicted RBP13.84□□□□□ -0.19
USP54-209ENST00000464635 RNF41Q9H4P4 317 aaPredicted RBP13.84□□□□□ -0.19
USP54-209ENST00000464635 TAOK2Q9UL54 1235 aa13.84□□□□□ -0.19
USP54-209ENST00000464635 USP5P45974 858 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 EVX2Q03828 476 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 TOB2Q14106 344 aaPredicted RBP13.83□□□□□ -0.2
USP54-209ENST00000464635 SH3D19Q5HYK7 790 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 STOX1Q6ZVD7 989 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 RAET1EQ8TD07 263 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 STAG1Q8WVM7 1258 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 TMEM87BQ96K49 555 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 LLPHQ9BRT6 129 aaKnown RBP13.83□□□□□ -0.2
USP54-209ENST00000464635 KRT23Q9C075 422 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 ZBTB21Q9ULJ3 1066 aa13.83□□□□□ -0.2
USP54-209ENST00000464635 HLA-DOAP06340 250 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 ASNSP08243 561 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 HOXD10P28358 340 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 GRK4P32298 578 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 FOXP4Q8IVH2 680 aaPredicted RBP13.82□□□□□ -0.2
USP54-209ENST00000464635 MB21D2Q8IYB1 491 aaPredicted RBP13.82□□□□□ -0.2
USP54-209ENST00000464635 TMTC2Q8N394 836 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 SHISA4Q96DD7 197 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 ANP32EQ9BTT0 268 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 WDR18Q9BV38 432 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 TRIM34Q9BYJ4 488 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 CRNKL1Q9BZJ0 848 aaKnown RBP13.82□□□□□ -0.2
USP54-209ENST00000464635 ASCC2Q9H1I8 757 aaPredicted RBP13.82□□□□□ -0.2
USP54-209ENST00000464635 SLC4A4Q9Y6R1 1079 aa13.82□□□□□ -0.2
USP54-209ENST00000464635 TNPO2O14787 897 aaKnown RBP13.81□□□□□ -0.2
USP54-209ENST00000464635 PEX10O60683 326 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 APPP05067 770 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 LIFRP42702 1097 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 RCAN1P53805 252 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 AKNAD1Q5T1N1 836 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 RALYLQ86SE5 291 aaKnown RBP13.81□□□□□ -0.2
USP54-209ENST00000464635 LCORLQ8N3X6 602 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 ARMT1Q9H993 441 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 AS3MTQ9HBK9 375 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 EPB41L4AQ9HCS5 686 aaPredicted RBP13.81□□□□□ -0.2
USP54-209ENST00000464635 PNMA3Q9UL41 463 aa13.81□□□□□ -0.2
USP54-209ENST00000464635 PFKFB2O60825 505 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 GH2P01242 217 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 ELNP15502 786 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 PDCP20941 246 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 FLT3LGP49771 235 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 PLCD1P51178 756 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 BACE1P56817 501 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 NFKBIBQ15653 356 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 ME3Q16798 604 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 FAM110CQ1W6H9 321 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 Q6ZUG5 572 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 GBP4Q96PP9 640 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 TPCN1Q9ULQ1 816 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 TAF6LQ9Y6J9 622 aa13.8□□□□□ -0.2
USP54-209ENST00000464635 DHX16O60231 1041 aaKnown RBP13.79□□□□□ -0.2
USP54-209ENST00000464635 SLC34A2O95436 690 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 CCL5P13501 91 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 SHMT1P34896 483 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 PPP2R5BQ15173 497 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 TATDN1Q6P1N9 297 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 MFSD6Q6ZSS7 791 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 SGMS1Q86VZ5 419 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 SDR42E1Q8WUS8 393 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 EHD4Q9H223 541 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 ARPP21Q9UBL0 812 aaPredicted RBP13.79□□□□□ -0.2
USP54-209ENST00000464635 SERPINB13Q9UIV8 391 aa13.79□□□□□ -0.2
USP54-209ENST00000464635 ADCY3O60266 1144 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 BRD1O95696 1058 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 SLC3A2P08195 630 aaKnown RBP13.78□□□□□ -0.2
USP54-209ENST00000464635 CYP2D6P10635 497 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 GCLCP48506 637 aaPredicted RBP13.78□□□□□ -0.2
USP54-209ENST00000464635 TDO2P48775 406 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms