RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 UBAC1Q9BSL1 405 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 TACC3Q9Y6A5 838 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 USP17L15C9J2P7 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L13C9JLJ4 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L11C9JVI0 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L18D6R9N7 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L22D6RA61 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L17D6RBQ6 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L19D6RCP7 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L20D6RJB6 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 E7EWF7 191 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 SLC27A2O14975 620 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 VCAM1P19320 739 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 HOXA7P31268 230 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-204ENST00000463487 USP17L24Q0WX57 530 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 NECTIN1Q15223 517 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 NOM1Q5C9Z4 860 aaKnown RBP23.32■■□□□ 1.32
COL9A3-204ENST00000463487 SIAH1Q8IUQ4 282 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 MKL1Q969V6 931 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 TTC14Q96N46 770 aa23.32■■□□□ 1.32
COL9A3-204ENST00000463487 WDR46O15213 610 aaKnown RBP23.31■■□□□ 1.32
COL9A3-204ENST00000463487 TLR2O60603 784 aa23.31■■□□□ 1.32
COL9A3-204ENST00000463487 MCCP23508 829 aa23.31■■□□□ 1.32
COL9A3-204ENST00000463487 KRT32Q14532 448 aa23.31■■□□□ 1.32
COL9A3-204ENST00000463487 SART3Q15020 963 aaKnown RBP23.31■■□□□ 1.32
COL9A3-204ENST00000463487 GTF3C2Q8WUA4 911 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-204ENST00000463487 TSKSQ9UJT2 592 aa23.31■■□□□ 1.32
COL9A3-204ENST00000463487 MYH4Q9Y623 1939 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 ERICH2A1L162 156 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 HSPA8P11142 646 aaKnown RBP23.3■■□□□ 1.32
COL9A3-204ENST00000463487 DGKZQ13574 1117 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 GMCL1P1Q8NEA9 526 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 TANGO6Q9C0B7 1094 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 RPAP3Q9H6T3 665 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-204ENST00000463487 IL17RBQ9NRM6 502 aa23.3■■□□□ 1.32
COL9A3-204ENST00000463487 TOP1P11387 765 aaKnown RBP23.29■■□□□ 1.32
COL9A3-204ENST00000463487 GCLCP48506 637 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-204ENST00000463487 DGKHQ86XP1 1220 aa23.29■■□□□ 1.32
COL9A3-204ENST00000463487 SPICE1Q8N0Z3 855 aa23.29■■□□□ 1.32
COL9A3-204ENST00000463487 LRRC47Q8N1G4 583 aaKnown RBP23.29■■□□□ 1.32
COL9A3-204ENST00000463487 ZSCAN10Q96SZ4 725 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-204ENST00000463487 ASCC2Q9H1I8 757 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-204ENST00000463487 ZSWIM5Q9P217 1185 aa23.29■■□□□ 1.32
COL9A3-204ENST00000463487 F5H6K3 240 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 GPR25O00155 361 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 NMT2O60551 498 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 CYP2C8P10632 490 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 LBX1P52954 281 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 KLRC3Q07444 240 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 PCNTO95613 3336 aa23.28■■□□□ 1.32
COL9A3-204ENST00000463487 NOVP48745 357 aa23.27■■□□□ 1.32
COL9A3-204ENST00000463487 CATSPERGQ6ZRH7 1159 aa23.27■■□□□ 1.32
COL9A3-204ENST00000463487 FKTNO75072 461 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 NDUFB10O96000 172 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 ZKSCAN3Q9BRR0 538 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 PRDM10Q9NQV6 1147 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 HOXC10Q9NYD6 342 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 ISY1Q9ULR0 285 aaKnown RBP23.26■■□□□ 1.31
COL9A3-204ENST00000463487 TNKSO95271 1327 aa23.26■■□□□ 1.31
COL9A3-204ENST00000463487 FLOT1O75955 427 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 MCM5P33992 734 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 HSPA4P34932 840 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 HERVK_113P62684 666 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 SP3Q02447 781 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 COG2Q14746 738 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 KIF22Q14807 665 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 ARHGEF6Q15052 776 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 TSGA10IPQ3SY00 556 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 IFIT1BQ5T764 474 aaKnown RBP23.25■■□□□ 1.31
COL9A3-204ENST00000463487 SLFN13Q68D06 897 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 STOX1Q6ZVD7 989 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 GMCL1Q96IK5 515 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 MTA3Q9BTC8 594 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 KAT14Q9H8E8 782 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 MYPNQ86TC9 1320 aa23.25■■□□□ 1.31
COL9A3-204ENST00000463487 IFIT3O14879 490 aaKnown RBP23.24■■□□□ 1.31
COL9A3-204ENST00000463487 HMGB1P09429 215 aaKnown RBP23.24■■□□□ 1.31
COL9A3-204ENST00000463487 SLC1A4P43007 532 aa23.24■■□□□ 1.31
COL9A3-204ENST00000463487 ERO1AQ96HE7 468 aa23.24■■□□□ 1.31
COL9A3-204ENST00000463487 TMEM47Q9BQJ4 181 aa23.24■■□□□ 1.31
COL9A3-204ENST00000463487 CPA4Q9UI42 421 aa23.24■■□□□ 1.31
COL9A3-204ENST00000463487 FAM83BQ5T0W9 1011 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 C17orf99Q6UX52 265 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 MB21D2Q8IYB1 491 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-204ENST00000463487 ENAHQ8N8S7 591 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-204ENST00000463487 ZNF296Q8WUU4 475 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-204ENST00000463487 DCAF4Q8WV16 495 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 ANKS1AQ92625 1134 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 NEK1Q96PY6 1258 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 TAF6LQ9Y6J9 622 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 ADGRA2Q96PE1 1338 aa23.23■■□□□ 1.31
COL9A3-204ENST00000463487 BMP3P12645 472 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 FAM110CQ1W6H9 321 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 KIAA1755Q5JYT7 1200 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 CYB5R4Q7L1T6 521 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 MB21D1Q8N884 522 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 TMEM87BQ96K49 555 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 P2RX7Q99572 595 aaKnown RBP23.22■■□□□ 1.31
COL9A3-204ENST00000463487 USP26Q9BXU7 913 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 R3HDMLQ9H3Y0 253 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms