RNA–Protein interactions for RNA: ENST00000457039.6

SMPD4-215, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-215ENST00000457039 ZSWIM5Q9P217 1185 aa16.68■□□□□ 0.26
SMPD4-215ENST00000457039 ADGRA2Q96PE1 1338 aa16.68■□□□□ 0.26
SMPD4-215ENST00000457039 CRHR2Q13324 411 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 TAF1CQ15572 869 aaPredicted RBP16.67■□□□□ 0.26
SMPD4-215ENST00000457039 C8orf34Q49A92 452 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 RNF20Q5VTR2 975 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 CYB5R4Q7L1T6 521 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 MB21D2Q8IYB1 491 aaPredicted RBP16.67■□□□□ 0.26
SMPD4-215ENST00000457039 RASEFQ8IZ41 740 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 NCOA7Q8NI08 942 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 LPAR1Q92633 364 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 STX8Q9UNK0 236 aa16.67■□□□□ 0.26
SMPD4-215ENST00000457039 TBC1D8O95759 1140 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 HSPA8P11142 646 aaKnown RBP16.66■□□□□ 0.26
SMPD4-215ENST00000457039 TRDNQ13061 729 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 PABPC4Q13310 644 aaKnown RBP eCLIP16.66■□□□□ 0.26
SMPD4-215ENST00000457039 LRRC47Q8N1G4 583 aaKnown RBP16.66■□□□□ 0.26
SMPD4-215ENST00000457039 GMCL1P1Q8NEA9 526 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 ANKS1AQ92625 1134 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 TTC14Q96N46 770 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 ZKSCAN3Q9BRR0 538 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 TSKSQ9UJT2 592 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 MYH4Q9Y623 1939 aa16.66■□□□□ 0.26
SMPD4-215ENST00000457039 F5H6K3 240 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 WDR46O15213 610 aaKnown RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 NDUFB10O96000 172 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 CYP2C8P10632 490 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 KLRC3Q07444 240 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 COL9A3Q14050 684 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 NOM1Q5C9Z4 860 aaKnown RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 CATSPERGQ6ZRH7 1159 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 IQCA1Q86XH1 822 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 DGKHQ86XP1 1220 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 SPICE1Q8N0Z3 855 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 ZSCAN10Q96SZ4 725 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 PARK7Q99497 189 aaKnown RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 TMEM47Q9BQJ4 181 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 ASCC2Q9H1I8 757 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 RPAP3Q9H6T3 665 aaPredicted RBP16.65■□□□□ 0.26
SMPD4-215ENST00000457039 ZFYVE28Q9HCC9 887 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 GOPCQ9HD26 462 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 PNMA3Q9UL41 463 aa16.65■□□□□ 0.26
SMPD4-215ENST00000457039 USP17L15C9J2P7 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L13C9JLJ4 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L11C9JVI0 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L18D6R9N7 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L22D6RA61 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L17D6RBQ6 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L19D6RCP7 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L20D6RJB6 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 TLR2O60603 784 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 SEC24BO95487 1268 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 ANTXR2P58335 489 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 USP17L24Q0WX57 530 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 SEC23AQ15436 765 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 CCDC178Q5BJE1 867 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 RALYLQ86SE5 291 aaKnown RBP16.64■□□□□ 0.25
SMPD4-215ENST00000457039 ENAHQ8N8S7 591 aaPredicted RBP16.64■□□□□ 0.25
SMPD4-215ENST00000457039 TNKSO95271 1327 aa16.64■□□□□ 0.25
SMPD4-215ENST00000457039 TOP1P11387 765 aaKnown RBP16.63■□□□□ 0.25
SMPD4-215ENST00000457039 ZKSCAN1P17029 563 aaPredicted RBP16.63■□□□□ 0.25
SMPD4-215ENST00000457039 OSBPP22059 807 aa16.63■□□□□ 0.25
SMPD4-215ENST00000457039 CTCFP49711 727 aaPredicted RBP16.63■□□□□ 0.25
SMPD4-215ENST00000457039 ADCK5Q3MIX3 580 aa16.63■□□□□ 0.25
SMPD4-215ENST00000457039 C17orf99Q6UX52 265 aa16.63■□□□□ 0.25
SMPD4-215ENST00000457039 SNX14Q9Y5W7 946 aa16.63■□□□□ 0.25
SMPD4-215ENST00000457039 GPR25O00155 361 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 EIF5BO60841 1220 aaKnown RBP16.62■□□□□ 0.25
SMPD4-215ENST00000457039 BCRP11274 1271 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 KRT32Q14532 448 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 SLFN13Q68D06 897 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 POTEEQ6S8J3 1075 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 GMCL1Q96IK5 515 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 P2RX7Q99572 595 aaKnown RBP16.62■□□□□ 0.25
SMPD4-215ENST00000457039 UBAC1Q9BSL1 405 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 MTA3Q9BTC8 594 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 RLFQ13129 1914 aa16.62■□□□□ 0.25
SMPD4-215ENST00000457039 HERVK_113P62684 666 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 IRX3P78415 501 aaPredicted RBP16.61■□□□□ 0.25
SMPD4-215ENST00000457039 FAM83BQ5T0W9 1011 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 LBX2Q6XYB7 198 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 RASGRP2Q7LDG7 609 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 CHST3Q7LGC8 479 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 IGDCC4Q8TDY8 1250 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 NEK1Q96PY6 1258 aa16.61■□□□□ 0.25
SMPD4-215ENST00000457039 NUP88Q99567 741 aaPredicted RBP16.61■□□□□ 0.25
SMPD4-215ENST00000457039 SPDYE16A6NNV3 312 aaPredicted RBP16.6■□□□□ 0.25
SMPD4-215ENST00000457039 PRC1O43663 620 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 MCM5P33992 734 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 LBX1P52954 281 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 EXOSC10Q01780 885 aaKnown RBP16.6■□□□□ 0.25
SMPD4-215ENST00000457039 SMCR8Q8TEV9 937 aaPredicted RBP16.6■□□□□ 0.25
SMPD4-215ENST00000457039 TANGO6Q9C0B7 1094 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 SENP2Q9HC62 589 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 CPA4Q9UI42 421 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 PARP14Q460N5 1801 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 MYPNQ86TC9 1320 aa16.6■□□□□ 0.25
SMPD4-215ENST00000457039 IFIT3O14879 490 aaKnown RBP16.59■□□□□ 0.25
SMPD4-215ENST00000457039 RAD21O60216 631 aa16.59■□□□□ 0.25
SMPD4-215ENST00000457039 SNHG28P0DPA3 235 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms