RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 TM4SF4P48230 202 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 USP14P54578 494 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 ANAPC15P60006 121 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 SREBF2Q12772 1141 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 CCDC178Q5BJE1 867 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 PPP4R3BQ5MIZ7 849 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 TREML2Q5T2D2 321 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 GPAT2Q6NUI2 795 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 FASTKD5Q7L8L6 764 aaKnown RBP15.32■□□□□ 0.04
VPS33A-202ENST00000451053 DGKHQ86XP1 1220 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 PROCA1Q8NCQ7 364 aaPredicted RBP15.32■□□□□ 0.04
VPS33A-202ENST00000451053 C12orf42Q96LP6 360 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 TCEANC2Q96MN5 208 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 TMEM47Q9BQJ4 181 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 LRRC2Q9BYS8 371 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 VCPKMTQ9H867 229 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 GPHNQ9NQX3 736 aaPredicted RBP15.32■□□□□ 0.04
VPS33A-202ENST00000451053 TMOD4Q9NZQ9 345 aa15.32■□□□□ 0.04
VPS33A-202ENST00000451053 IFIT3O14879 490 aaKnown RBP15.31■□□□□ 0.04
VPS33A-202ENST00000451053 RAD21O60216 631 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 TOP1P11387 765 aaKnown RBP15.31■□□□□ 0.04
VPS33A-202ENST00000451053 VCAM1P19320 739 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 CASTP20810 708 aaKnown RBP15.31■□□□□ 0.04
VPS33A-202ENST00000451053 EXOSC10Q01780 885 aaKnown RBP15.31■□□□□ 0.04
VPS33A-202ENST00000451053 TMEM67Q5HYA8 995 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 RASGRP2Q7LDG7 609 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 IFNL1Q8IU54 200 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 SPICE1Q8N0Z3 855 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 FAM43AQ8N2R8 423 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 IGDCC4Q8TDY8 1250 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 ANKS1AQ92625 1134 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 TTC14Q96N46 770 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 SENP2Q9HC62 589 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 GOPCQ9HD26 462 aa15.31■□□□□ 0.04
VPS33A-202ENST00000451053 F5H6K3 240 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 SH2B2O14492 632 aaPredicted RBP15.3■□□□□ 0.04
VPS33A-202ENST00000451053 NDUFB10O96000 172 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 HMGB1P09429 215 aaKnown RBP15.3■□□□□ 0.04
VPS33A-202ENST00000451053 PSMA5P28066 241 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 INHBEP58166 350 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 KLRC3Q07444 240 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 BLOC1S2Q6QNY1 142 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 DHX32Q7L7V1 743 aaKnown RBP15.3■□□□□ 0.04
VPS33A-202ENST00000451053 ANKRD23Q86SG2 305 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 GMCL1P1Q8NEA9 526 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 IL27Q8NEV9 243 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 CHMP4CQ96CF2 233 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 IL17RAQ96F46 866 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 SYNPO2Q9UMS6 1093 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 AGTPBP1Q9UPW5 1226 aa15.3■□□□□ 0.04
VPS33A-202ENST00000451053 RBM19Q9Y4C8 960 aaKnown RBP15.3■□□□□ 0.04
VPS33A-202ENST00000451053 WDR19Q8NEZ3 1342 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 ERICH2A1L162 156 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 RPS6KB1P23443 525 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 ANP32AP39687 249 aaKnown RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 WTAPQ15007 396 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 SART3Q15020 963 aaKnown RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 IFIT1BQ5T764 474 aaKnown RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 SLFN13Q68D06 897 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 LPAR1Q92633 364 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 TMEM87BQ96K49 555 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 NUP88Q99567 741 aaPredicted RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 MTA3Q9BTC8 594 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 UPF3BQ9BZI7 483 aaKnown RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 TM6SF1Q9BZW5 370 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 RPAP3Q9H6T3 665 aaPredicted RBP15.29■□□□□ 0.04
VPS33A-202ENST00000451053 KAT14Q9H8E8 782 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 LY9Q9HBG7 655 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 ZSWIM6Q9HCJ5 1215 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 MTMR7Q9Y216 660 aa15.29■□□□□ 0.04
VPS33A-202ENST00000451053 PDHXO00330 501 aa15.28■□□□□ 0.04
VPS33A-202ENST00000451053 FAM83BQ5T0W9 1011 aa15.28■□□□□ 0.04
VPS33A-202ENST00000451053 RUFY3Q7L099 469 aa15.28■□□□□ 0.04
VPS33A-202ENST00000451053 PNMA1Q8ND90 353 aa15.28■□□□□ 0.04
VPS33A-202ENST00000451053 WDR46O15213 610 aaKnown RBP15.27■□□□□ 0.04
VPS33A-202ENST00000451053 HOXA7P31268 230 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-202ENST00000451053 JMYQ8N9B5 988 aa15.27■□□□□ 0.04
VPS33A-202ENST00000451053 KIF2CQ99661 725 aa15.27■□□□□ 0.04
VPS33A-202ENST00000451053 TANGO6Q9C0B7 1094 aa15.27■□□□□ 0.04
VPS33A-202ENST00000451053 SLC45A1Q9Y2W3 748 aa15.27■□□□□ 0.04
VPS33A-202ENST00000451053 CYP46A1Q9Y6A2 500 aa15.27■□□□□ 0.04
VPS33A-202ENST00000451053 USP17L15C9J2P7 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L13C9JLJ4 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L11C9JVI0 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L18D6R9N7 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L22D6RA61 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L17D6RBQ6 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L19D6RCP7 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L20D6RJB6 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 CYP2C8P10632 490 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 MAP2K1Q02750 393 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-202ENST00000451053 USP17L24Q0WX57 530 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 RABEP1Q15276 862 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 TAF1CQ15572 869 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-202ENST00000451053 OTUD7BQ6GQQ9 843 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 NFXL1Q6ZNB6 911 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 CATSPERGQ6ZRH7 1159 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 Q6ZUG5 572 aa15.26■□□□□ 0.03
VPS33A-202ENST00000451053 GMCL1Q96IK5 515 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms