RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ARHGAP23Q9P227 1491 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 CSF1RP07333 972 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 CTR9Q6PD62 1173 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 TRIM65Q6PJ69 517 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 SMARCC1Q92922 1105 aaPredicted RBP13.38□□□□□ -0.27
MSH6-204ENST00000445503 FERMT2Q96AC1 680 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 TCP11L1Q9NUJ3 509 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 NMT2O60551 498 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 BMP6P22004 513 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 BAZ2BQ9UIF8 2168 aaKnown RBP13.38□□□□□ -0.27
MSH6-204ENST00000445503 NCAPH2Q6IBW4 605 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 RAD9BQ6WBX8 426 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 GDAQ9Y2T3 454 aa13.38□□□□□ -0.27
MSH6-204ENST00000445503 WDR19Q8NEZ3 1342 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 TFRCP02786 760 aaKnown RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 TBC1D8BQ0IIM8 1120 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 NTRK3Q16288 839 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 DNAJC21Q5F1R6 531 aaKnown RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 UIMC1Q96RL1 719 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 ADGRG1Q9Y653 693 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 COPB1P53618 953 aaKnown RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 CENPHQ9H3R5 247 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 MMRN2Q9H8L6 949 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 FAM217BQ9NTX9 383 aaPredicted RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 MRFAP1Q9Y605 127 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 OVOS2A0A0G2JMS6 1433 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 SMIM22K7EJ46 135 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 AKR1B10O60218 316 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 CALM1P0DP23 149 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 CALM2P0DP24 149 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 CALM3P0DP25 149 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 TDRD12Q587J7 1177 aaKnown RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 RNF26Q9BY78 433 aaPredicted RBP13.37□□□□□ -0.27
MSH6-204ENST00000445503 EXOC1Q9NV70 894 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 ANKIB1Q9P2G1 1089 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 ZNF652Q9Y2D9 606 aa13.37□□□□□ -0.27
MSH6-204ENST00000445503 KCNQ4P56696 695 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 PPARDQ03181 441 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 KRT31Q15323 416 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 LETM2Q2VYF4 491 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 PLEKHA4Q9H4M7 779 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 RBM28Q9NW13 759 aaKnown RBP13.36□□□□□ -0.27
MSH6-204ENST00000445503 MAP3K9P80192 1104 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 TRIM28Q13263 835 aaKnown RBP13.36□□□□□ -0.27
MSH6-204ENST00000445503 CUL4BQ13620 913 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 BRD3Q15059 726 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 GSDMAQ96QA5 445 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 NAA15Q9BXJ9 866 aaKnown RBP13.36□□□□□ -0.27
MSH6-204ENST00000445503 ABCB6Q9NP58 842 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 INTS13Q9NVM9 706 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 NALCNQ8IZF0 1738 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 A0A0U1RQJ8 604 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 CYLC1P35663 651 aaPredicted RBP13.36□□□□□ -0.27
MSH6-204ENST00000445503 EPS15P42566 896 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 KCNJ6P48051 423 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 MAP9Q49MG5 647 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 CACNA2D4Q7Z3S7 1137 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 TICAM2Q86XR7 235 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 CSGALNACT2Q8N6G5 542 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 ATRIPQ8WXE1 791 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 SUGCTQ9HAC7 445 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 NFAT5O94916 1531 aa13.36□□□□□ -0.27
MSH6-204ENST00000445503 MFAP3LO75121 409 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 TSPY3P0CV98 308 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 TSPY8P0CW00 308 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 FXR1P51114 621 aaKnown RBP eCLIP13.35□□□□□ -0.272e-6■■■□□ 14.9
MSH6-204ENST00000445503 ENAHQ8N8S7 591 aaPredicted RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 CCDC42Q96M95 316 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 SLAIN2Q9P270 581 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 MYO6Q9UM54 1294 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 FAN1Q9Y2M0 1017 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 TRIM49BA6NDI0 452 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 SAP30BPQ9UHR5 308 aaKnown RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 EPN1Q9Y6I3 576 aaPredicted RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 KRT86O43790 486 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 RPN1P04843 607 aaKnown RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 STAG1Q8WVM7 1258 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 TOPAZ1Q8N9V7 1692 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 ANKRD65E5RJM6 399 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 GOLGA8HP0CJ92 632 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 CD44P16070 742 aaKnown RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 MRPS25P82663 173 aaKnown RBP13.35□□□□□ -0.27
MSH6-204ENST00000445503 TFAP4Q01664 338 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 PDE4DQ08499 809 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 INF2Q27J81 1249 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 CCDC93Q567U6 631 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 OR8K1Q8NGG5 319 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 PANX2Q96RD6 677 aa13.35□□□□□ -0.27
MSH6-204ENST00000445503 SRGAP2O75044 1071 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 CALML3P27482 149 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 NAPAP54920 295 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 KIF5AQ12840 1032 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 NR1I3Q14994 352 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 BRINP3Q76B58 766 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 JAKMIP2Q96AA8 810 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 ADAM21Q9UKJ8 722 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 STK36Q9NRP7 1315 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 LTN1O94822 1766 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 CCDC151A5D8V7 595 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 ACTN4O43707 911 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms