RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 CAP2P40123 477 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 COL9A3Q14050 684 aaPredicted RBP20.29■□□□□ 0.84
LIME1-202ENST00000444951 RAB3GAP1Q15042 981 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 ARHGEF6Q15052 776 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 CHST3Q7LGC8 479 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 SCYL3Q8IZE3 742 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 NEK1Q96PY6 1258 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 ZKSCAN3Q9BRR0 538 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 CABP5Q9NP86 173 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 CXCL11O14625 94 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 CTNND1O60716 968 aaKnown RBP20.28■□□□□ 0.84
LIME1-202ENST00000444951 KIF22Q14807 665 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 TSGA10IPQ3SY00 556 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 CYB5R4Q7L1T6 521 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 CLEC10AQ8IUN9 316 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 CCDC17Q96LX7 622 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 TAOK2Q9UL54 1235 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 ZHX2Q9Y6X8 837 aa20.28■□□□□ 0.84
LIME1-202ENST00000444951 A0A0G2JLL6 359 aaPredicted RBP20.27■□□□□ 0.84
LIME1-202ENST00000444951 NMT2O60551 498 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 CASTP20810 708 aaKnown RBP20.27■□□□□ 0.84
LIME1-202ENST00000444951 PSMC4P43686 418 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 ATP2B2Q01814 1243 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 SEPT2Q15019 361 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 PRRT2Q7Z6L0 340 aaPredicted RBP20.27■□□□□ 0.84
LIME1-202ENST00000444951 TBC1D32Q96NH3 1257 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 PICK1Q9NRD5 415 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 ZSWIM5Q9P217 1185 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 ZBTB21Q9ULJ3 1066 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 AFG3L2Q9Y4W6 797 aa20.27■□□□□ 0.84
LIME1-202ENST00000444951 MGAMO43451 1857 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 BCRP11274 1271 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 OSBPP22059 807 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 PSMA5P28066 241 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 RBM25P49756 843 aaKnown RBP20.26■□□□□ 0.83
LIME1-202ENST00000444951 ANAPC15P60006 121 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 BLOC1S2Q6QNY1 142 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 NBPF11Q86T75 865 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 MB21D2Q8IYB1 491 aaPredicted RBP20.26■□□□□ 0.83
LIME1-202ENST00000444951 TCEANC2Q96MN5 208 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 TMEM106CQ9BVX2 250 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 LRRC2Q9BYS8 371 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 UPF3BQ9BZI7 483 aaKnown RBP20.26■□□□□ 0.83
LIME1-202ENST00000444951 SRRDQ9UH36 339 aa20.26■□□□□ 0.83
LIME1-202ENST00000444951 ATAD5Q96QE3 1844 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 PRC1O43663 620 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 MTFR1Q15390 333 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 GADL1Q6ZQY3 521 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 TMEM179Q6ZVK1 233 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 NEDD1Q8NHV4 660 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 UBAC1Q9BSL1 405 aa20.25■□□□□ 0.83
LIME1-202ENST00000444951 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.25■□□□□ 0.83
LIME1-202ENST00000444951 ASNSP08243 561 aa20.24■□□□□ 0.83
LIME1-202ENST00000444951 MCM5P33992 734 aa20.24■□□□□ 0.83
LIME1-202ENST00000444951 ANTXR2P58335 489 aa20.24■□□□□ 0.83
LIME1-202ENST00000444951 IQCA1Q86XH1 822 aa20.24■□□□□ 0.83
LIME1-202ENST00000444951 PARK7Q99497 189 aaKnown RBP20.24■□□□□ 0.83
LIME1-202ENST00000444951 CYP46A1Q9Y6A2 500 aa20.24■□□□□ 0.83
LIME1-202ENST00000444951 TRIM75PA6NK02 468 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 IFIT3O14879 490 aaKnown RBP20.23■□□□□ 0.83
LIME1-202ENST00000444951 FMNL1O95466 1100 aaPredicted RBP20.23■□□□□ 0.83
LIME1-202ENST00000444951 GNRH1P01148 92 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 HMGB1P09429 215 aaKnown RBP20.23■□□□□ 0.83
LIME1-202ENST00000444951 GUCY1A2P33402 732 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 FGD1P98174 961 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 CEP95Q96GE4 821 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 ZSCAN10Q96SZ4 725 aaPredicted RBP20.23■□□□□ 0.83
LIME1-202ENST00000444951 IL17RBQ9NRM6 502 aa20.23■□□□□ 0.83
LIME1-202ENST00000444951 RPS6KB1P23443 525 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 ICA1Q05084 483 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 TMEM67Q5HYA8 995 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 RUFY3Q7L099 469 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 DHX32Q7L7V1 743 aaKnown RBP20.22■□□□□ 0.83
LIME1-202ENST00000444951 SHISA4Q96DD7 197 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 ZSWIM6Q9HCJ5 1215 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 GPHNQ9NQX3 736 aaPredicted RBP20.22■□□□□ 0.83
LIME1-202ENST00000444951 STX8Q9UNK0 236 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 TNKSO95271 1327 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 MYPNQ86TC9 1320 aa20.22■□□□□ 0.83
LIME1-202ENST00000444951 ERICH2A1L162 156 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 USP17L5A8MUK1 530 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 EEF2P13639 858 aaKnown RBP20.21■□□□□ 0.83
LIME1-202ENST00000444951 PRMT2P55345 433 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 PRKCZQ05513 592 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 SART3Q15020 963 aaKnown RBP20.21■□□□□ 0.83
LIME1-202ENST00000444951 FASTKD5Q7L8L6 764 aaKnown RBP20.21■□□□□ 0.83
LIME1-202ENST00000444951 CHMP4CQ96CF2 233 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 KIF2CQ99661 725 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 TM6SF1Q9BZW5 370 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 KANSL2Q9H9L4 492 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 MTMR4Q9NYA4 1195 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 CLIP2Q9UDT6 1046 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 GABRQQ9UN88 632 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 PLIN4Q96Q06 1357 aa20.21■□□□□ 0.83
LIME1-202ENST00000444951 DOCK3Q8IZD9 2030 aa20.2■□□□□ 0.83
LIME1-202ENST00000444951 IGKV6D-41A0A0C4DH26 115 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 RAD21O60216 631 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 NEK4P51957 841 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 EXOSC10Q01780 885 aaKnown RBP20.2■□□□□ 0.82
LIME1-202ENST00000444951 ZYXQ15942 572 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms