RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LSM14BQ9BX40 385 aaKnown RBP19.04■□□□□ 0.64
PTPRF-209ENST00000438120 PZPP20742 1482 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 PPP2R5BQ15173 497 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 MYSM1Q5VVJ2 828 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.04■□□□□ 0.648e-7■■■□□ 15.8
PTPRF-209ENST00000438120 PALD1Q9ULE6 856 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 GTF2A1P52655 376 aaPredicted RBP19.03■□□□□ 0.64
PTPRF-209ENST00000438120 C2CD5Q86YS7 1000 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 RNF169Q8NCN4 708 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 XPO4Q9C0E2 1151 aaKnown RBP19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ARHGEF10O15013 1369 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 BSPRYQ5W0U4 402 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 IFT20Q8IY31 132 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ST7Q9NRC1 585 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ABCB4P21439 1286 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ZNF827Q17R98 1081 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ARHGEF16Q5VV41 709 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 PEX26Q7Z412 305 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 STIM2Q9P246 746 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 WDR62O43379 1518 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 PDE6AP16499 860 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 ATP5DP30049 168 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 OGFRQ9NZT2 677 aa19.03■□□□□ 0.64
PTPRF-209ENST00000438120 PSTPIP2Q9H939 334 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 STK24Q9Y6E0 443 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 ARHGEF12Q9NZN5 1544 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 TUBBP07437 444 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 HSPD1P10809 573 aaKnown RBP19.02■□□□□ 0.64
PTPRF-209ENST00000438120 TPCN1Q9ULQ1 816 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 THRAP3Q9Y2W1 955 aaKnown RBP19.02■□□□□ 0.64
PTPRF-209ENST00000438120 STK10O94804 968 aaKnown RBP19.02■□□□□ 0.64
PTPRF-209ENST00000438120 U2AF1L4Q8WU68 220 aaKnown RBP19.02■□□□□ 0.64
PTPRF-209ENST00000438120 TNKSO95271 1327 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 FLOT1O75955 427 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 BLIDQ8IZY5 108 aa19.02■□□□□ 0.64
PTPRF-209ENST00000438120 CTTNBP2Q8WZ74 1663 aa19.02■□□□□ 0.63
PTPRF-209ENST00000438120 CHRNDQ07001 517 aa19.02■□□□□ 0.63
PTPRF-209ENST00000438120 KRBA2Q6ZNG9 492 aa19.02■□□□□ 0.63
PTPRF-209ENST00000438120 MLXIPQ9HAP2 919 aa19.02■□□□□ 0.63
PTPRF-209ENST00000438120 H7C1D1 291 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 NR1I2O75469 434 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 PDE6BP35913 854 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 BTDP43251 543 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 RPS6KA1Q15418 735 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 SPOUT1Q5T280 376 aaKnown RBP19.01■□□□□ 0.63
PTPRF-209ENST00000438120 HOOK2Q96ED9 719 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 TMEM63CQ9P1W3 806 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 FAM47CQ5HY64 1035 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 DEPTORQ8TB45 409 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 IFIH1Q9BYX4 1025 aaKnown RBP19.01■□□□□ 0.63
PTPRF-209ENST00000438120 M0QZ92 97 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 CLIC6Q96NY7 704 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 USP28Q96RU2 1077 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 MAST1Q9Y2H9 1570 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 VPS52Q8N1B4 723 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 PNMA1Q8ND90 353 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 ZMYND15Q9H091 742 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 KDRP35968 1356 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 GOLGA6CA6NDK9 693 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 ARHGAP6O43182 974 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 GOLGA6DP0CG33 693 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 NOSTRINQ8IVI9 506 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 CCDC110Q8TBZ0 833 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 GOLGA6AQ9NYA3 693 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 TRPC6Q9Y210 931 aa19.01■□□□□ 0.63
PTPRF-209ENST00000438120 FANCBQ8NB91 859 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 GREM2Q9H772 168 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 NDUFAB1O14561 156 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 GMNNO75496 209 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 USPL1Q5W0Q7 1092 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 ZBTB38Q8NAP3 1195 aaPredicted RBP19■□□□□ 0.63
PTPRF-209ENST00000438120 PUS3Q9BZE2 481 aaKnown RBP19■□□□□ 0.63
PTPRF-209ENST00000438120 IMPACTQ9P2X3 320 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 COBLO75128 1261 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 FYB2Q5VWT5 728 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 CHURC1Q8WUH1 139 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 KLRF2D3W0D1 207 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 STMN2Q93045 179 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 DESI2Q9BSY9 194 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 NT5C3AQ9H0P0 336 aa19■□□□□ 0.63
PTPRF-209ENST00000438120 FGAP02671 866 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 ATP8A2Q9NTI2 1148 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 SSH3Q8TE77 659 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 CSADQ9Y600 493 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 KCNJ18B7U540 433 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 ADORA1P30542 326 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 KCNJ12Q14500 433 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 CERKLQ49MI3 558 aaPredicted RBP18.99■□□□□ 0.63
PTPRF-209ENST00000438120 CEP85LQ5SZL2 805 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 TBC1D31Q96DN5 1066 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 EEF2KMTQ96G04 330 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 CHAMP1Q96JM3 812 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 YARSP54577 528 aaKnown RBP18.99■□□□□ 0.63
PTPRF-209ENST00000438120 TTC31Q49AM3 519 aaPredicted RBP18.99■□□□□ 0.63
PTPRF-209ENST00000438120 PCDHA12Q9UN75 941 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 CIB2O75838 187 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 OTUD6AQ7L8S5 288 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 SHANK2Q9UPX8 1470 aa18.99■□□□□ 0.63
PTPRF-209ENST00000438120 LTKP29376 864 aa18.98■□□□□ 0.63
PTPRF-209ENST00000438120 ZNF131P52739 623 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms