RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 hCG_1642624A0A1W2PR95 340 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 PTPREP23469 700 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 MSNP26038 577 aaKnown RBP29.52■■■□□ 2.32
CPNE1-216ENST00000437340 MYH1P12882 1939 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 PTMAP06454 111 aaKnown RBP29.52■■■□□ 2.32
CPNE1-216ENST00000437340 FKBP1AP62942 108 aaKnown RBP29.52■■■□□ 2.32
CPNE1-216ENST00000437340 ZNF579Q8NAF0 562 aaKnown RBP29.52■■■□□ 2.32
CPNE1-216ENST00000437340 TMEM47Q9BQJ4 181 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 LZTS2Q9BRK4 669 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 SH3GLB2Q9NR46 395 aa29.52■■■□□ 2.32
CPNE1-216ENST00000437340 BMP15O95972 392 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 PIM2Q9P1W9 311 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 MAD2L2Q9UI95 211 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 ZKSCAN5Q9Y2L8 839 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 PCDHB6Q9Y5E3 794 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 CD2APQ9Y5K6 639 aa29.51■■■□□ 2.31
CPNE1-216ENST00000437340 ZNF646O15015 1829 aaPredicted RBP29.5■■■□□ 2.31
CPNE1-216ENST00000437340 NPY5RQ15761 445 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 TNFRSF25Q93038 417 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 CLIC6Q96NY7 704 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 MRIQ9BWK5 157 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 FBXO2Q9UK22 296 aaPredicted RBP29.5■■■□□ 2.31
CPNE1-216ENST00000437340 STX8Q9UNK0 236 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 SCN9AQ15858 1988 aa29.5■■■□□ 2.31
CPNE1-216ENST00000437340 AP5Z1O43299 807 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 NOVP48745 357 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 IQCB1Q15051 598 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 CCDC93Q567U6 631 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 ELOA2Q8IYF1 753 aaPredicted RBP29.49■■■□□ 2.31
CPNE1-216ENST00000437340 SRPRBQ9Y5M8 271 aaKnown RBP29.49■■■□□ 2.31
CPNE1-216ENST00000437340 PLIN4Q96Q06 1357 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 TRIM75PA6NK02 468 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 F8W031 263 aaPredicted RBP29.49■■■□□ 2.31
CPNE1-216ENST00000437340 PLCB2Q00722 1185 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 FAM177A1Q8N128 213 aaPredicted RBP29.49■■■□□ 2.31
CPNE1-216ENST00000437340 TEKT1Q969V4 418 aa29.49■■■□□ 2.31
CPNE1-216ENST00000437340 NAT10Q9H0A0 1025 aaKnown RBP29.49■■■□□ 2.31
CPNE1-216ENST00000437340 CALML3P27482 149 aa29.48■■■□□ 2.31
CPNE1-216ENST00000437340 GABPAQ06546 454 aa29.48■■■□□ 2.31
CPNE1-216ENST00000437340 C11orf57Q6ZUT1 292 aaPredicted RBP29.48■■■□□ 2.31
CPNE1-216ENST00000437340 CEP57L1Q8IYX8 460 aa29.48■■■□□ 2.31
CPNE1-216ENST00000437340 PALM3A6NDB9 673 aaPredicted RBP29.47■■■□□ 2.31
CPNE1-216ENST00000437340 ZRSR1Q15695 479 aaKnown RBP29.47■■■□□ 2.31
CPNE1-216ENST00000437340 STRIP1Q5VSL9 837 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 KCNH3Q9ULD8 1083 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 NLRP5P59047 1200 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 STAG2Q8N3U4 1231 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 DBNDD1Q9H9R9 158 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 USP40Q9NVE5 1235 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 FAM13BQ9NYF5 915 aa29.47■■■□□ 2.31
CPNE1-216ENST00000437340 FER1L6Q2WGJ9 1857 aa29.46■■■□□ 2.31
CPNE1-216ENST00000437340 MYO3BQ8WXR4 1341 aa29.46■■■□□ 2.31
CPNE1-216ENST00000437340 TOP1P11387 765 aaKnown RBP29.46■■■□□ 2.31
CPNE1-216ENST00000437340 TRAPPC10P48553 1259 aa29.46■■■□□ 2.31
CPNE1-216ENST00000437340 EIF2AK3Q9NZJ5 1116 aaKnown RBP29.46■■■□□ 2.31
CPNE1-216ENST00000437340 SWAP70Q9UH65 585 aa29.46■■■□□ 2.31
CPNE1-216ENST00000437340 GOLGA6L19H0YKK7 550 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 AOC3Q16853 763 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 GRIPAP1Q4V328 841 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 DALRD3Q5D0E6 543 aaKnown RBP29.45■■■□□ 2.31
CPNE1-216ENST00000437340 RTKN2Q8IZC4 609 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 SUPT20HQ8NEM7 779 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 MXD3Q9BW11 206 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 SPON1Q9HCB6 807 aa29.45■■■□□ 2.31
CPNE1-216ENST00000437340 HDLBPQ00341 1268 aaKnown RBP29.44■■■□□ 2.3
CPNE1-216ENST00000437340 PICALMQ13492 652 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 EARS2Q5JPH6 523 aaKnown RBP29.44■■■□□ 2.3
CPNE1-216ENST00000437340 APOBEC3HQ6NTF7 200 aaKnown RBP29.44■■■□□ 2.3
CPNE1-216ENST00000437340 BPIFA3Q9BQP9 254 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 SMARCA1P28370 1054 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 KIAA2012Q0VF49 1180 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 CDC42EP5Q6NZY7 148 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 ZDHHC15Q96MV8 337 aa29.44■■■□□ 2.3
CPNE1-216ENST00000437340 DDX4Q9NQI0 724 aaKnown RBP29.44■■■□□ 2.3
CPNE1-216ENST00000437340 SCNN1DP51172 638 aa29.43■■■□□ 2.3
CPNE1-216ENST00000437340 CEP95Q96GE4 821 aa29.43■■■□□ 2.3
CPNE1-216ENST00000437340 PSMD1Q99460 953 aa29.43■■■□□ 2.3
CPNE1-216ENST00000437340 SPZ1Q9BXG8 430 aa29.43■■■□□ 2.3
CPNE1-216ENST00000437340 OSBPL5Q9H0X9 879 aaPredicted RBP29.43■■■□□ 2.3
CPNE1-216ENST00000437340 TUBE1Q9UJT0 475 aa29.43■■■□□ 2.3
CPNE1-216ENST00000437340 PSME4Q14997 1843 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 FAM205CA6NFA0 338 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 NLRP12P59046 1061 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 GALNT17Q6IS24 598 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 SARM1Q6SZW1 724 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 KRBA2Q6ZNG9 492 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 ERCC4Q92889 916 aaPredicted RBP29.42■■■□□ 2.3
CPNE1-216ENST00000437340 FERMT2Q96AC1 680 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 ARFGEF1Q9Y6D6 1849 aa29.42■■■□□ 2.3
CPNE1-216ENST00000437340 BECN2A8MW95 431 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 ZNF500O60304 480 aaPredicted RBP29.41■■■□□ 2.3
CPNE1-216ENST00000437340 ECE2O60344 883 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 TPM3P06753 285 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 ATP2B1P20020 1258 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 CRKP46108 304 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.41■■■□□ 2.3
CPNE1-216ENST00000437340 PLA2G4DQ86XP0 818 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 CCDC148Q8NFR7 591 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 NLGN2Q8NFZ4 835 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 GOLGA6L6A8MZA4 724 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms