RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 FAM205CA6NFA0 338 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 HIBADHP31937 336 aaKnown RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 EARS2Q5JPH6 523 aaKnown RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 SAMSN1Q9NSI8 373 aaKnown RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 PARP3Q9Y6F1 533 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 KIF20AO95235 890 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 GYS1P13807 737 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 ATP2B1P20020 1258 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 CDK11BP21127 795 aaKnown RBP16.28■□□□□ 0.2
LIG1-202ENST00000427526 PLCD1P51178 756 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 DYNLL1P63167 89 aaKnown RBP16.28■□□□□ 0.2
LIG1-202ENST00000427526 PRR5LQ6MZQ0 368 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 SH3RF1Q7Z6J0 888 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 ZSCAN10Q96SZ4 725 aaPredicted RBP16.28■□□□□ 0.2
LIG1-202ENST00000427526 CASZ1Q86V15 1759 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 PRPF3O43395 683 aaKnown RBP16.28■□□□□ 0.2
LIG1-202ENST00000427526 SRRTQ9BXP5 876 aaKnown RBP16.28■□□□□ 0.2
LIG1-202ENST00000427526 VPS54Q9P1Q0 977 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 MYH6P13533 1939 aa16.28■□□□□ 0.2
LIG1-202ENST00000427526 TRIM75PA6NK02 468 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 FGRP09769 529 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 CT47A1Q5JQC4 288 aaPredicted RBP16.27■□□□□ 0.2
LIG1-202ENST00000427526 APTXQ7Z2E3 356 aaKnown RBP16.27■□□□□ 0.2
LIG1-202ENST00000427526 CACNA1SQ13698 1873 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 A0A1B0GTH6 734 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 ADRA2BP18089 450 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 ADKP55263 362 aaKnown RBP16.27■□□□□ 0.2
LIG1-202ENST00000427526 EPSTI1Q96J88 318 aa16.27■□□□□ 0.2
LIG1-202ENST00000427526 SLFN14P0C7P3 912 aa16.27■□□□□ 0.19
LIG1-202ENST00000427526 XBP1P17861 261 aa16.27■□□□□ 0.19
LIG1-202ENST00000427526 PROM2Q8N271 834 aa16.27■□□□□ 0.19
LIG1-202ENST00000427526 DUOX1Q9NRD9 1551 aa16.27■□□□□ 0.19
LIG1-202ENST00000427526 ANKIB1Q9P2G1 1089 aa16.27■□□□□ 0.19
LIG1-202ENST00000427526 IGSF3O75054 1194 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 KRT2P35908 639 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 AKAP17AQ02040 695 aaKnown RBP16.26■□□□□ 0.19
LIG1-202ENST00000427526 TROAPQ12815 778 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 ARHGAP29Q52LW3 1261 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 TNFRSF25Q93038 417 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 GOLGA6L9A6NEM1 432 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 WNT7AO00755 349 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 CLCN6P51797 869 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 GRAPQ13588 217 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 NPY5RQ15761 445 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 TOGARAM2Q6ZUX3 1019 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 GRAPLQ8TC17 118 aaPredicted RBP16.26■□□□□ 0.19
LIG1-202ENST00000427526 DHX58Q96C10 678 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 PAGE5Q96GU1 130 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 BRIP1Q9BX63 1249 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 V9GY48 417 aaPredicted RBP16.26■□□□□ 0.19
LIG1-202ENST00000427526 TNRC6CQ9HCJ0 1690 aaKnown RBP16.26■□□□□ 0.19
LIG1-202ENST00000427526 A0A1B0GUL6 1792 aa16.26■□□□□ 0.19
LIG1-202ENST00000427526 TADA3O75528 432 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 URI1O94763 535 aaPredicted RBP16.25■□□□□ 0.19
LIG1-202ENST00000427526 PLEKHA8P1O95397 391 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 CUL4BQ13620 913 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 PLCD3Q8N3E9 789 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 GPR101Q96P66 508 aaPredicted RBP16.25■□□□□ 0.19
LIG1-202ENST00000427526 PRDM1O75626 825 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 SERPINB2P05120 415 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 CD44P16070 742 aaKnown RBP16.25■□□□□ 0.19
LIG1-202ENST00000427526 PRDX5P30044 214 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 MECOMQ03112 1051 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 FERMT2Q96AC1 680 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 NSUN4Q96CB9 384 aaKnown RBP16.25■□□□□ 0.19
LIG1-202ENST00000427526 MYH2Q9UKX2 1941 aa16.25■□□□□ 0.19
LIG1-202ENST00000427526 CYP2D7A0A087X1C5 515 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 hCG_1642624A0A1W2PR95 340 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 EFCAB8A8MWE9 144 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 MAP3K9P80192 1104 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 SLC27A3Q5K4L6 730 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 IFIT1BQ5T764 474 aaKnown RBP16.24■□□□□ 0.19
LIG1-202ENST00000427526 SPATA1Q5VX52 437 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 CATIPQ7Z7H3 387 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 UBXN4Q92575 508 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 SYMPKQ92797 1274 aaKnown RBP16.24■□□□□ 0.19
LIG1-202ENST00000427526 WDR24Q96S15 920 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 RBM28Q9NW13 759 aaKnown RBP16.24■□□□□ 0.19
LIG1-202ENST00000427526 FHOD1Q9Y613 1164 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 SEMA3EO15041 775 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 DPYDQ12882 1025 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 IRS2Q9Y4H2 1338 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 VGLL3A8MV65 326 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 PCP11498 1178 aaKnown RBP16.24■□□□□ 0.19
LIG1-202ENST00000427526 BMS1Q14692 1282 aaKnown RBP16.24■□□□□ 0.19
LIG1-202ENST00000427526 GSDMAQ96QA5 445 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 CARD6Q9BX69 1037 aa16.24■□□□□ 0.19
LIG1-202ENST00000427526 DLEC1Q9Y238 1755 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 TEX33O43247 280 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 BMP15O95972 392 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 CALM1P0DP23 149 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 CALM2P0DP24 149 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 CALM3P0DP25 149 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 PBX1P40424 430 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 AFMP43652 599 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 TERF2Q15554 542 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 TXNRD1Q16881 649 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 NOM1Q5C9Z4 860 aaKnown RBP16.23■□□□□ 0.19
LIG1-202ENST00000427526 CDKAL1Q5VV42 579 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 CTR9Q6PD62 1173 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms