RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 NIM1KQ8IY84 436 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 DIS3L2Q8IYB7 885 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 LINC00301Q8NCQ3 95 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 CCDC148Q8NFR7 591 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 MRPS27Q92552 414 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 TNMDQ9H2S6 317 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 CLSTN2Q9H4D0 955 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 STX8Q9UNK0 236 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 GJA3Q9Y6H8 435 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 V9GY48 417 aaPredicted RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 MYH8P13535 1937 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 GOLGB1Q14789 3259 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 LTBP3Q9NS15 1303 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 hCG_1984214I3L0E3 225 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 RAD17O75943 681 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 PARP1P09874 1014 aaKnown RBP10.88□□□□□ -0.67
HMGB4-201ENST00000425537 SCG2P13521 617 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 FAM160A1Q05DH4 1040 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 GABPAQ06546 454 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 FUT2Q10981 343 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 RSBN1LQ6PCB5 846 aaPredicted RBP10.88□□□□□ -0.67
HMGB4-201ENST00000425537 CCAR1Q8IX12 1150 aaKnown RBP10.88□□□□□ -0.67
HMGB4-201ENST00000425537 CCDC82Q8N4S0 544 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 ZNF713Q8N859 430 aaPredicted RBP10.88□□□□□ -0.67
HMGB4-201ENST00000425537 IL17RBQ9NRM6 502 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 DACT1Q9NYF0 836 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 PI4KBQ9UBF8 816 aa10.88□□□□□ -0.67
HMGB4-201ENST00000425537 MORC2Q9Y6X9 1032 aaPredicted RBP10.88□□□□□ -0.67
HMGB4-201ENST00000425537 CNTNAP5Q8WYK1 1306 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SCN9AQ15858 1988 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 YDJCA8MPS7 323 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SMIM22K7EJ46 135 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 NMT2O60551 498 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 CUTAO60888 179 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 DDNO94850 711 aaPredicted RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 CCDC173Q0VFZ6 552 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 TNIP1Q15025 636 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 ZRSR1Q15695 479 aaKnown RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 PFKFB3Q16875 520 aaPredicted RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SLC4A8Q2Y0W8 1093 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 ASPRV1Q53RT3 343 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SASS6Q6UVJ0 657 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 GAS2L3Q86XJ1 694 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 ZSCAN29Q8IWY8 852 aaPredicted RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 AGBL3Q8NEM8 1001 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 JDP2Q8WYK2 163 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 CCDC34Q96HJ3 373 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 PGBD1Q96JS3 809 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 AIFM3Q96NN9 605 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 TMEM47Q9BQJ4 181 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 PHF20Q9BVI0 1012 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 MXD3Q9BW11 206 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SPZ1Q9BXG8 430 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SEC63Q9UGP8 760 aaKnown RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 HOOK1Q9UJC3 728 aaKnown RBP10.87□□□□□ -0.67
HMGB4-201ENST00000425537 ZNRF3Q9ULT6 936 aa10.87□□□□□ -0.67
HMGB4-201ENST00000425537 SHTN1A0MZ66 631 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 KIF28PB7ZC32 967 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 PLEKHA8P1O95397 391 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 TTLL1O95922 423 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 VIL1P09327 827 aaKnown RBP10.86□□□□□ -0.67
HMGB4-201ENST00000425537 LIG1P18858 919 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 CMA1P23946 247 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 TRAPPC10P48553 1259 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 NOVP48745 357 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 NLRP5P59047 1200 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 DLGAP5Q15398 846 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 PKN1Q16512 942 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 CFAP100Q494V2 611 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 TPRNQ4KMQ1 711 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 SRBD1Q8N5C6 995 aaKnown RBP10.86□□□□□ -0.67
HMGB4-201ENST00000425537 FSIP1Q8NA03 581 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 SLC44A5Q8NCS7 719 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 RRP36Q96EU6 259 aaKnown RBP10.86□□□□□ -0.67
HMGB4-201ENST00000425537 NMRK2Q9NPI5 230 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 MTMR4Q9NYA4 1195 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 PCDHA7Q9UN72 937 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 CLIC4Q9Y696 253 aa10.86□□□□□ -0.67
HMGB4-201ENST00000425537 ZNF646O15015 1829 aaPredicted RBP10.86□□□□□ -0.67
HMGB4-201ENST00000425537 PALM3A6NDB9 673 aaPredicted RBP10.85□□□□□ -0.67
HMGB4-201ENST00000425537 TRIM75PA6NK02 468 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 BTBD18B2RXH4 712 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 KLRF2D3W0D1 207 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 MYO1BO43795 1136 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 GUCY1A2P33402 732 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 GPATCH4Q5T3I0 446 aaKnown RBP10.85□□□□□ -0.67
HMGB4-201ENST00000425537 FKBP1CQ5VVH2 108 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 KRI1Q8N9T8 703 aaKnown RBP10.85□□□□□ -0.67
HMGB4-201ENST00000425537 CEP95Q96GE4 821 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 DDX4Q9NQI0 724 aaKnown RBP10.85□□□□□ -0.67
HMGB4-201ENST00000425537 FAM13BQ9NYF5 915 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 MAD2L2Q9UI95 211 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 HERC5Q9UII4 1024 aaKnown RBP10.85□□□□□ -0.67
HMGB4-201ENST00000425537 KCNJ14Q9UNX9 436 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 ATRNL1Q5VV63 1379 aa10.85□□□□□ -0.67
HMGB4-201ENST00000425537 MPHOSPH10O00566 681 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 NR1I2O75469 434 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 RPS12P25398 132 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 GNA11P29992 359 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms