RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 SNAPC2Q13487 334 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 MTMR2Q13614 643 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 ESR2Q92731 530 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 CEP95Q96GE4 821 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 KRT23Q9C075 422 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 KANSL2Q9H9L4 492 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 ZSWIM5Q9P217 1185 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 GREB1LQ9C091 1923 aaPredicted RBP18.28■□□□□ 0.52
SHOX2-202ENST00000425436 CCL15-CCL14A0A0B4J2E2 113 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 IGKV6D-41A0A0C4DH26 115 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 USP17L10C9JJH3 530 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 BACE1P56817 501 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 TRDNQ13061 729 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 CCL15Q16663 113 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 NOL8Q76FK4 1167 aaKnown RBP18.28■□□□□ 0.52
SHOX2-202ENST00000425436 BRI3BPQ8WY22 251 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 CLIP2Q9UDT6 1046 aa18.28■□□□□ 0.52
SHOX2-202ENST00000425436 PTPRFP10586 1907 aa18.27■□□□□ 0.52
SHOX2-202ENST00000425436 MANSC4A6NHS7 340 aaPredicted RBP18.27■□□□□ 0.51
SHOX2-202ENST00000425436 TRAK2O60296 914 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 BAG4O95429 457 aaKnown RBP18.27■□□□□ 0.51
SHOX2-202ENST00000425436 CETPP11597 493 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 DEKP35659 375 aaKnown RBP18.27■□□□□ 0.51
SHOX2-202ENST00000425436 HMGCS2P54868 508 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 COL9A3Q14050 684 aaPredicted RBP18.27■□□□□ 0.51
SHOX2-202ENST00000425436 GADL1Q6ZQY3 521 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 CYB5R4Q7L1T6 521 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 CHST3Q7LGC8 479 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 FEZ1Q99689 392 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 PTPN18Q99952 460 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 CNNM2Q9H8M5 875 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 MTMR4Q9NYA4 1195 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 SMC3Q9UQE7 1217 aa18.27■□□□□ 0.51
SHOX2-202ENST00000425436 A0A0G2JLL6 359 aaPredicted RBP18.26■□□□□ 0.51
SHOX2-202ENST00000425436 BRD1O95696 1058 aa18.26■□□□□ 0.51
SHOX2-202ENST00000425436 MOGSQ13724 837 aa18.26■□□□□ 0.51
SHOX2-202ENST00000425436 PRRT2Q7Z6L0 340 aaPredicted RBP18.26■□□□□ 0.51
SHOX2-202ENST00000425436 NCOA7Q8NI08 942 aa18.26■□□□□ 0.51
SHOX2-202ENST00000425436 ARHGEF10LQ9HCE6 1279 aa18.26■□□□□ 0.51
SHOX2-202ENST00000425436 STX8Q9UNK0 236 aa18.26■□□□□ 0.51
SHOX2-202ENST00000425436 MYH4Q9Y623 1939 aa18.25■□□□□ 0.51
SHOX2-202ENST00000425436 TM4SF4P48230 202 aa18.25■□□□□ 0.51
SHOX2-202ENST00000425436 DHX32Q7L7V1 743 aaKnown RBP18.25■□□□□ 0.51
SHOX2-202ENST00000425436 RALYLQ86SE5 291 aaKnown RBP18.25■□□□□ 0.51
SHOX2-202ENST00000425436 EMILIN3Q9NT22 766 aa18.25■□□□□ 0.51
SHOX2-202ENST00000425436 TESPA1A2RU30 521 aaPredicted RBP18.24■□□□□ 0.51
SHOX2-202ENST00000425436 C19orf81C9J6K1 198 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 IGF2BP3O00425 579 aaKnown RBP eCLIP18.24■□□□□ 0.51
SHOX2-202ENST00000425436 RAD21O60216 631 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 TTLL1O95922 423 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 CPA1P15085 419 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 SREBF2Q12772 1141 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 KIAA1755Q5JYT7 1200 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 NYAP2Q9P242 653 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 TMX2Q9Y320 296 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 PLIN4Q96Q06 1357 aa18.24■□□□□ 0.51
SHOX2-202ENST00000425436 BTBD19C9JJ37 291 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 INHBEP58166 350 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 TREML2Q5T2D2 321 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 USP17L2Q6R6M4 530 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 FASTKD5Q7L8L6 764 aaKnown RBP18.23■□□□□ 0.51
SHOX2-202ENST00000425436 IFNL1Q8IU54 200 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 SPICE1Q8N0Z3 855 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 LRRC47Q8N1G4 583 aaKnown RBP18.23■□□□□ 0.51
SHOX2-202ENST00000425436 FAM43AQ8N2R8 423 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 KIAA1683Q9H0B3 1180 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 TCP11L1Q9NUJ3 509 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 TMOD4Q9NZQ9 345 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 SH3D19Q5HYK7 790 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 GPAT2Q6NUI2 795 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 IQCA1Q86XH1 822 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 MB21D2Q8IYB1 491 aaPredicted RBP18.23■□□□□ 0.51
SHOX2-202ENST00000425436 FBXL16Q8N461 479 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 ZSCAN10Q96SZ4 725 aaPredicted RBP18.23■□□□□ 0.51
SHOX2-202ENST00000425436 ZDHHC9Q9Y397 364 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 ATP6V1DQ9Y5K8 247 aa18.23■□□□□ 0.51
SHOX2-202ENST00000425436 PDCP20941 246 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 USP14P54578 494 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 ANTXR2P58335 489 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 CACNB1Q02641 598 aaPredicted RBP18.22■□□□□ 0.51
SHOX2-202ENST00000425436 ME3Q16798 604 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 RCSD1Q6JBY9 416 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 MKL1Q969V6 931 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 UBAC1Q9BSL1 405 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 TPCN1Q9ULQ1 816 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 MTMR7Q9Y216 660 aa18.22■□□□□ 0.51
SHOX2-202ENST00000425436 THSD7BQ9C0I4 1608 aa18.21■□□□□ 0.51
SHOX2-202ENST00000425436 FGD1P98174 961 aa18.21■□□□□ 0.51
SHOX2-202ENST00000425436 REM2Q8IYK8 340 aaPredicted RBP18.21■□□□□ 0.51
SHOX2-202ENST00000425436 TMEM47Q9BQJ4 181 aa18.21■□□□□ 0.51
SHOX2-202ENST00000425436 SH2D4AQ9H788 454 aa18.21■□□□□ 0.51
SHOX2-202ENST00000425436 TNKSO95271 1327 aa18.21■□□□□ 0.51
SHOX2-202ENST00000425436 F5H6K3 240 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 PDHXO00330 501 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 IFIT3O14879 490 aaKnown RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 PRC1O43663 620 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 TRPA1O75762 1119 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 NOVP48745 357 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 EXOSC10Q01780 885 aaKnown RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 MAP2K1Q02750 393 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms