RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 KIF23Q02241 960 aaPredicted RBP14.23□□□□□ -0.13
LINC00539-202ENST00000423575 CCL15Q16663 113 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 CCDC178Q5BJE1 867 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 TMEM67Q5HYA8 995 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 KIAA1755Q5JYT7 1200 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 DGKHQ86XP1 1220 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 IGDCC4Q8TDY8 1250 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 ANKS1AQ92625 1134 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 MKL1Q969V6 931 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 KIF2CQ99661 725 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 TMEM47Q9BQJ4 181 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 SH2D4AQ9H788 454 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 VCPKMTQ9H867 229 aa14.23□□□□□ -0.13
LINC00539-202ENST00000423575 MANSC4A6NHS7 340 aaPredicted RBP14.22□□□□□ -0.13
LINC00539-202ENST00000423575 C19orf81C9J6K1 198 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 TOP1P11387 765 aaKnown RBP14.22□□□□□ -0.13
LINC00539-202ENST00000423575 CETPP11597 493 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 SART3Q15020 963 aaKnown RBP14.22□□□□□ -0.13
LINC00539-202ENST00000423575 USP17L2Q6R6M4 530 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 RASGRP2Q7LDG7 609 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 TMEM87BQ96K49 555 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 C12orf42Q96LP6 360 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 TTC14Q96N46 770 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 MTA3Q9BTC8 594 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 LY9Q9HBG7 655 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 SYNPO2Q9UMS6 1093 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 THSD7BQ9C0I4 1608 aa14.22□□□□□ -0.13
LINC00539-202ENST00000423575 ERICH2A1L162 156 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 TESPA1A2RU30 521 aaPredicted RBP14.21□□□□□ -0.13
LINC00539-202ENST00000423575 NDUFB10O96000 172 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 VCAM1P19320 739 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 USP14P54578 494 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 WTAPQ15007 396 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 TREML2Q5T2D2 321 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 IFIT1BQ5T764 474 aaKnown RBP14.21□□□□□ -0.13
LINC00539-202ENST00000423575 GPAT2Q6NUI2 795 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 GADL1Q6ZQY3 521 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 RUFY3Q7L099 469 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 SPICE1Q8N0Z3 855 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 PTPN18Q99952 460 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 GOPCQ9HD26 462 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 TMOD4Q9NZQ9 345 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 CYP46A1Q9Y6A2 500 aa14.21□□□□□ -0.13
LINC00539-202ENST00000423575 BTBD19C9JJ37 291 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 F5H6K3 240 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 IGF2BP3O00425 579 aaKnown RBP eCLIP14.2□□□□□ -0.14
LINC00539-202ENST00000423575 RAD21O60216 631 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 KLRC3Q07444 240 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 FASTKD5Q7L8L6 764 aaKnown RBP14.2□□□□□ -0.14
LINC00539-202ENST00000423575 FAM43AQ8N2R8 423 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 DNAJC5GQ8N7S2 189 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 PROCA1Q8NCQ7 364 aaPredicted RBP14.2□□□□□ -0.14
LINC00539-202ENST00000423575 PNMA1Q8ND90 353 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 GMCL1P1Q8NEA9 526 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 LPAR1Q92633 364 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 KAT14Q9H8E8 782 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 MTMR7Q9Y216 660 aa14.2□□□□□ -0.14
LINC00539-202ENST00000423575 PTPRFP10586 1907 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 LOC285556D6RIA3 1793 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 MAP2K2P36507 400 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 LIFRP42702 1097 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 SREBF2Q12772 1141 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 SLFN13Q68D06 897 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 Q6ZUG5 572 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 CHMP4CQ96CF2 233 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 NUP88Q99567 741 aaPredicted RBP14.19□□□□□ -0.14
LINC00539-202ENST00000423575 AGXT2Q9BYV1 514 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 AGTPBP1Q9UPW5 1226 aa14.19□□□□□ -0.14
LINC00539-202ENST00000423575 WDR46O15213 610 aaKnown RBP14.18□□□□□ -0.14
LINC00539-202ENST00000423575 PDHBP11177 359 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 TM4SF4P48230 202 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 FAM83BQ5T0W9 1011 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 ANKRD23Q86SG2 305 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 SGMS1Q86VZ5 419 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 IFNL1Q8IU54 200 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 BRF1Q92994 677 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 GMCL1Q96IK5 515 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 RPAP3Q9H6T3 665 aaPredicted RBP14.18□□□□□ -0.14
LINC00539-202ENST00000423575 PDRG1Q9NUG6 133 aa14.18□□□□□ -0.14
LINC00539-202ENST00000423575 PDHXO00330 501 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 SNHG28P0DPA3 235 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 INHBEP58166 350 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 FGD1P98174 961 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 TOB2Q14106 344 aaPredicted RBP14.17□□□□□ -0.14
LINC00539-202ENST00000423575 NFXL1Q6ZNB6 911 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 ZNF654Q8IZM8 581 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 FBXL16Q8N461 479 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 DCAF4Q8WV16 495 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 MYL10Q9BUA6 226 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 BRPF3Q9ULD4 1205 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 MYH4Q9Y623 1939 aa14.17□□□□□ -0.14
LINC00539-202ENST00000423575 KLF18A0A0U1RQI7 1052 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 CCDC69A6NI79 296 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L15C9J2P7 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L13C9JLJ4 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L11C9JVI0 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L18D6R9N7 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L22D6RA61 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L17D6RBQ6 530 aa14.16□□□□□ -0.14
LINC00539-202ENST00000423575 USP17L19D6RCP7 530 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms