RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SLBPQ14493 270 aaKnown RBP eCLIP3.69□□□□□ -1.82
VPS13A-208ENST00000423463 FAM196AQ6ZSG2 479 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 ATG3Q9NT62 314 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 RNF112Q9ULX5 631 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 POLR3KQ9Y2Y1 108 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-208ENST00000423463 SNCAIPQ9Y6H5 919 aa3.69□□□□□ -1.82
VPS13A-208ENST00000423463 RRBP1Q9P2E9 1410 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ZMYM3Q14202 1370 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 WASHC2CQ9Y4E1 1318 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 CD97P48960 835 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 CEBPAP49715 358 aaPredicted RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 SCARA3Q6AZY7 606 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 REC114Q7Z4M0 266 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 RNF34Q969K3 372 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 PIM2Q9P1W9 311 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 KLHL3Q9UH77 587 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 LEMD3Q9Y2U8 911 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 DNMT1P26358 1616 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ROCK1Q13464 1354 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ADGBQ8N7X0 1667 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 PLXNC1O60486 1568 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 UPK3BL1B0FP48 263 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 UPK3BL2E5RIL1 263 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 SCAMP3O14828 347 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 CYP26A1O43174 497 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 DNAJA2O60884 412 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ITIH2P19823 946 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 HDLBPQ00341 1268 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 METTL16Q86W50 562 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 NT5DC4Q86YG4 428 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 Q8N3U1 123 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 RIN3Q8TB24 985 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ACSF2Q96CM8 615 aaPredicted RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 MIPEPQ99797 713 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 PCMTD2Q9NV79 361 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 TJP2Q9UDY2 1190 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 SUPT16HQ9Y5B9 1047 aaKnown RBP3.68□□□□□ -1.82
VPS13A-208ENST00000423463 DUOX2Q9NRD8 1548 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 ADGRL2O95490 1459 aa3.68□□□□□ -1.82
VPS13A-208ENST00000423463 MADDQ8WXG6 1647 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 PLCG1P19174 1290 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 APOBRQ0VD83 1088 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 SEZ6Q53EL9 994 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 OGFOD3Q6PK18 319 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 ZNF507Q8TCN5 953 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 SPON2Q9BUD6 331 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 METTL22Q9BUU2 404 aaPredicted RBP3.67□□□□□ -1.82
VPS13A-208ENST00000423463 BRMS1Q9HCU9 246 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 PRDM10Q9NQV6 1147 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 SIGLEC1Q9BZZ2 1709 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 PTPRKQ15262 1439 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 ERBINQ96RT1 1412 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 CNTNAP4Q9C0A0 1308 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 SLITRK5O94991 958 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 HTR3BO95264 441 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 FOSL1P15407 271 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 VAMP1P23763 118 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 DUSP27Q5VZP5 1158 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 GK5Q6ZS86 529 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 KIAA0825Q8IV33 1275 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 PLD6Q8N2A8 252 aaKnown RBP3.67□□□□□ -1.82
VPS13A-208ENST00000423463 REV1Q9UBZ9 1251 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 KANK1Q14678 1352 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 FAM135AQ9P2D6 1515 aa3.67□□□□□ -1.82
VPS13A-208ENST00000423463 ADAMTS4O75173 837 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 LRP8Q14114 963 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 MPP2Q14168 576 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 MSMPQ1L6U9 139 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 HID1Q8IV36 788 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 GIMAP7Q8NHV1 300 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 EAF1Q96JC9 268 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 HEXIM2Q96MH2 286 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 METTL5Q9NRN9 209 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 ZC3H7BQ9UGR2 993 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 NPATQ14207 1427 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 ANKRD50Q9ULJ7 1429 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 PRR33A8MZF0 331 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 HYAL3O43820 417 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 GREM1O60565 184 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 COBLO75128 1261 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 LRIG2O94898 1065 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 MCM4P33991 863 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 CD96P40200 585 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 PDE4BQ07343 736 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 CWF19L2Q2TBE0 894 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 CCDC84Q86UT8 332 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 TMEM87BQ96K49 555 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 KCNQ5Q9NR82 932 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 TPX2Q9ULW0 747 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 PCDHB14Q9Y5E9 798 aa3.66□□□□□ -1.82
VPS13A-208ENST00000423463 RIMS1Q86UR5 1692 aaKnown RBP3.66□□□□□ -1.82
VPS13A-208ENST00000423463 EOMESO95936 686 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 CYP27A1Q02318 531 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 CYP27C1Q4G0S4 372 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 LETMD1Q6P1Q0 360 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 KCT2Q8NC54 265 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 FAM13CQ8NE31 585 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 FOXQ1Q9C009 403 aa3.65□□□□□ -1.82
VPS13A-208ENST00000423463 DDX41Q9UJV9 622 aaKnown RBP3.65□□□□□ -1.82
VPS13A-208ENST00000423463 KDM5DQ9BY66 1539 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms