RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CTDSPL2Q05D32 466 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 CKAP4Q07065 602 aaKnown RBP12.46□□□□□ -0.42
LIMS1-207ENST00000422797 SF3B2Q13435 895 aaKnown RBP12.46□□□□□ -0.42
LIMS1-207ENST00000422797 NOM1Q5C9Z4 860 aaKnown RBP12.46□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF569Q5MCW4 686 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 CATIPQ7Z7H3 387 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 NOC3LQ8WTT2 800 aaKnown RBP12.46□□□□□ -0.42
LIMS1-207ENST00000422797 ANKZF1Q9H8Y5 726 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 CABP5Q9NP86 173 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 TRMT112Q9UI30 125 aaKnown RBP12.46□□□□□ -0.42
LIMS1-207ENST00000422797 ADAM21Q9UKJ8 722 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 L1RE1Q9UN81 338 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 SLC4A4Q9Y6R1 1079 aa12.46□□□□□ -0.42
LIMS1-207ENST00000422797 TOGARAM1Q9Y4F4 1720 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 A0A1W2PQC6 194 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 PPP1R3GB7ZBB8 358 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 GUCY1A2P33402 732 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 ATP2C1P98194 919 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-207ENST00000422797 PPARAQ07869 468 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 RAD51AP2Q09MP3 1159 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 PAK1Q13153 545 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF827Q17R98 1081 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 TSR1Q2NL82 804 aaKnown RBP12.45□□□□□ -0.42
LIMS1-207ENST00000422797 ARL6IP4Q66PJ3 421 aaKnown RBP12.45□□□□□ -0.42
LIMS1-207ENST00000422797 IQCEQ6IPM2 695 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 CABLES1Q8TDN4 633 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 MED15Q96RN5 788 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 HAUS4Q9H6D7 363 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 ARMT1Q9H993 441 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 LZTFL1Q9NQ48 299 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 TOMM22Q9NS69 142 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 ABHD10Q9NUJ1 306 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 DENND2AQ9ULE3 1009 aa12.45□□□□□ -0.42
LIMS1-207ENST00000422797 RREB1Q92766 1687 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 TARSL2A2RTX5 802 aaKnown RBP12.44□□□□□ -0.42
LIMS1-207ENST00000422797 H7C1D1 291 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 N4BP3O15049 544 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 TEX33O43247 280 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 GYPCP04921 128 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 CASP14P31944 242 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 PPP1R2P41236 205 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 GRIN1Q05586 938 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 NR5A1Q13285 461 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 RASGRF1Q13972 1273 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 SEC23AQ15436 765 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 SPECC1Q5M775 1068 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 TTC38Q5R3I4 469 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 CTR9Q6PD62 1173 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 IQCA1Q86XH1 822 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 DNAJC10Q8IXB1 793 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 GOLGA6L1Q8N7Z2 621 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 NEK11Q8NG66 645 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 SYMPKQ92797 1274 aaKnown RBP12.44□□□□□ -0.42
LIMS1-207ENST00000422797 TMEM51Q9NW97 253 aa12.44□□□□□ -0.42
LIMS1-207ENST00000422797 PSMD14O00487 310 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 EEF1GP26641 437 aaKnown RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 HOXA7P31268 230 aaPredicted RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 LONP1P36776 959 aaKnown RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 IL6STP40189 918 aaPredicted RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 COPB1P53618 953 aaKnown RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 KRT83P78385 493 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 STIM1Q13586 685 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 KRT31Q15323 416 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 RRP12Q5JTH9 1297 aaKnown RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF658Q5TYW1 1059 aaPredicted RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 GRAMD1CQ8IYS0 662 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 SLC35F6Q8N357 371 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 NUP133Q8WUM0 1156 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 CCDC85AQ96PX6 553 aaPredicted RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
LIMS1-207ENST00000422797 BRIP1Q9BX63 1249 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 MAGEF1Q9HAY2 307 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 MYO6Q9UM54 1294 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 TNKSO95271 1327 aa12.43□□□□□ -0.42
LIMS1-207ENST00000422797 CALML3P27482 149 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 LMAN1P49257 510 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 AARSP49588 968 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ST5P78524 1137 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 MTF1Q14872 753 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 HSP90AA4PQ58FG1 418 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 TCP11X2Q5H9J9 407 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 LHX8Q68G74 356 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 CCDC70Q6NSX1 233 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF34Q8IZ26 560 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 LCORLQ8N3X6 602 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 RETREG2Q8NC44 543 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ZSCAN10Q96SZ4 725 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 NUP88Q99567 741 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 NUP58Q9BVL2 599 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 FAM107BQ9H098 131 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 RASSF4Q9H2L5 321 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 GNL3LQ9NVN8 582 aaKnown RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 CTNND2Q9UQB3 1225 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF330Q9Y3S2 320 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ZNF335Q9H4Z2 1342 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 DUOX1Q9NRD9 1551 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 DLEC1Q9Y238 1755 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ANO9A1A5B4 782 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 KCNJ18B7U540 433 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 H3BQF6 201 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms