RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 IVNS1ABPQ9Y6Y0 642 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 ALPK3Q96L96 1907 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 ZNF236Q9UL36 1845 aa13.9□□□□□ -0.18
SQSTM1-203ENST00000422245 AKR1B1P15121 316 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 GRB14Q14449 540 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 COG2Q14746 738 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 WDR78Q5VTH9 848 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 C16orf86Q6ZW13 317 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 MB21D1Q8N884 522 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 NBPF3Q9H094 633 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 DCTPP1Q9H773 170 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 HOXC10Q9NYD6 342 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 BTBD7Q9P203 1132 aa13.89□□□□□ -0.19
SQSTM1-203ENST00000422245 USP17L12C9JPN9 530 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 USP17L21D6R901 530 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 CHGBP05060 677 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 HOXC6P09630 235 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 PTPREP23469 700 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 CDK8P49336 464 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 CACNB2Q08289 660 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 CCL14Q16627 93 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 MFSD14CQ5VZR4 134 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 KBTBD3Q8NAB2 608 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 PUS7LQ9H0K6 701 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 VCPKMTQ9H867 229 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 TMX2Q9Y320 296 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 RLFQ13129 1914 aa13.88□□□□□ -0.19
SQSTM1-203ENST00000422245 CYP2D7A0A087X1C5 515 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 WDR46O15213 610 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 MNX1P50219 401 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 CLEC10AQ8IUN9 316 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 SHCBP1Q8NEM2 672 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 PRO3102Q9H379 93 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 C11orf49Q9H6J7 331 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 RBM27Q9P2N5 1060 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 FRMPD3Q5JV73 1810 aa13.87□□□□□ -0.19
SQSTM1-203ENST00000422245 ROBO3Q96MS0 1386 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 PARP14Q460N5 1801 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 A0A1W2PPC1 479 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 FLOT1O75955 427 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 ZFYP08048 801 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 LRRFIP1Q32MZ4 808 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 GIMAP6Q6P9H5 292 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 CTR9Q6PD62 1173 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 APPBP2Q92624 585 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 STRBPQ96SI9 672 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 MOV10L1Q9BXT6 1211 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 SPATC1LQ9H0A9 340 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 KANSL2Q9H9L4 492 aa13.86□□□□□ -0.19
SQSTM1-203ENST00000422245 RNF113AO15541 343 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 STRNO43815 780 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 MSCO60682 206 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 CCND3P30281 292 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 DSG3P32926 999 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 ATP2B2Q01814 1243 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 SBK1Q52WX2 424 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 KIAA1755Q5JYT7 1200 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 TSHZ3Q63HK5 1081 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 SIAH1Q8IUQ4 282 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 SPICE1Q8N0Z3 855 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 TTC41PQ6P2S7 1318 aa13.85□□□□□ -0.19
SQSTM1-203ENST00000422245 GREB1LQ9C091 1923 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 SMIM22K7EJ46 135 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 ERC2O15083 957 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 EEF2P13639 858 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 GNAT2P19087 354 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 ERCC3P19447 782 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 ADORA2AP29274 412 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 LHX8Q68G74 356 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 C7orf61Q8IZ16 206 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 ABRAQ8N0Z2 381 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 ATG4CQ96DT6 458 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 MROH8Q9H579 483 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 GOPCQ9HD26 462 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 SLC5A4Q9NY91 659 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 FLRT1Q9NZU1 646 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 PFASO15067 1338 aa13.84□□□□□ -0.19
SQSTM1-203ENST00000422245 GSG1L2A8MUP6 293 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 GPAA1O43292 621 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 COL6A1P12109 1028 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 OLFML2BQ68BL8 750 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 DPP9Q86TI2 863 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 NPLOC4Q8TAT6 608 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 OSBP2Q969R2 916 aa13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 DDX20Q9UHI6 824 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 RANBP2P49792 3224 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-203ENST00000422245 SLC25A27O95847 323 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 IGHA2P01877 340 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 CYBAP13498 195 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 COPB2P35606 906 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 TDO2P48775 406 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 RRP1P56182 461 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 PLS1Q14651 629 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 NCAPG2Q86XI2 1143 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 MKNK2Q9HBH9 465 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 ZNF287Q9HBT7 754 aa13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 EPB41L4AQ9HCS5 686 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-203ENST00000422245 COL11A1P12107 1806 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 RASA1P20936 1047 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 CYP2C19P33261 490 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms