RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 RFPL1O75677 317 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 C6orf222P0C671 652 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 DEKP35659 375 aaKnown RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 IARSP41252 1262 aaKnown RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 TMEM95Q3KNT9 176 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 WIPI1Q5MNZ9 446 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 TDRD10Q5VZ19 366 aaKnown RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 PJA1Q8NG27 643 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SCLYQ96I15 445 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SARGQ9BW04 601 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 EPN3Q9H201 632 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 GMIPQ9P107 970 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 KLHL3Q9UH77 587 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 DDX20Q9UHI6 824 aaKnown RBP6.39□□□□□ -1.39
VPS13A-207ENST00000419472 SAMM50Q9Y512 469 aa6.39□□□□□ -1.39
VPS13A-207ENST00000419472 DIP2BQ9P265 1576 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 E2F8A0AVK6 867 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 BLACEA4D250 179 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 M0R2C6 588 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 GFRA2O00451 464 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 B3GALT4O96024 378 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 ARNTP27540 789 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 SOX18P35713 384 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 MORC3Q14149 939 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 GALEQ14376 348 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 LRRFIP1Q32MZ4 808 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 YTHDC1Q96MU7 727 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 MRPL4Q9BYD3 311 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 VTA1Q9NP79 307 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 C11orf16Q9NQ32 467 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 ANLNQ9NQW6 1124 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 KLF15Q9UIH9 416 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 LZTS1Q9Y250 596 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 SLC12A7Q9Y666 1083 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 UACAQ9BZF9 1416 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PRR36Q9H6K5 1346 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 ABCA8O94911 1581 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 ABCC10Q5T3U5 1492 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 OPA1O60313 960 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 DGKGP49619 791 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 KCNQ4P56696 695 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PCDH1Q08174 1060 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 GRM3Q14832 879 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 DHX32Q7L7V1 743 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PLPPR2Q96GM1 343 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 LRGUKQ96M69 825 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 TTC1Q99614 292 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PLCD4Q9BRC7 762 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 AARSD1Q9BTE6 412 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PUS7LQ9H0K6 701 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 LUC7LQ9NQ29 371 aaKnown RBP6.38□□□□□ -1.39
VPS13A-207ENST00000419472 KDM5BQ9UGL1 1544 aa6.38□□□□□ -1.39
VPS13A-207ENST00000419472 PLB1Q6P1J6 1458 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 TP53P04637 393 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 CT47B1P0C2W7 299 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PURAQ00577 322 aaKnown RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 SETQ01105 290 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PLAURQ03405 335 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 FOXC1Q12948 553 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 DHCR24Q15392 516 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 ANO1Q5XXA6 986 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PPFIBP1Q86W92 1011 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 CBARPQ8N350 705 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PI4K2BQ8TCG2 481 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 SUSD2Q9UGT4 822 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 ZBTB42B2RXF5 422 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PRODHO43272 600 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 ITGAVP06756 1048 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 EPHX1P07099 455 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 PICALMQ13492 652 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 LRRC14Q15048 493 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 COBLL1Q53SF7 1204 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 VN1R5Q7Z5H4 357 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 SCUBE1Q8IWY4 988 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 LINC00528Q8N1L1 170 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 TAB3Q8N5C8 712 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 BHMTQ93088 406 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 CRISPLD1Q9H336 500 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 AS3MTQ9HBK9 375 aa6.37□□□□□ -1.39
VPS13A-207ENST00000419472 ZNF214Q9UL59 606 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-207ENST00000419472 AGRPO00253 132 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 NBNO60934 754 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PRKD3O94806 890 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 ECEL1O95672 775 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 MT-CO1P00395 513 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PF4V1P10720 104 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 RAG1P15918 1043 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LYSMD3Q7Z3D4 306 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 AMOTL1Q8IY63 956 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 OSBP2Q969R2 916 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 IPO9Q96P70 1041 aaKnown RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 MTA3Q9BTC8 594 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PBX4Q9BYU1 374 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 SLC12A5Q9H2X9 1139 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LUZP4Q9P127 313 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LRP2BPQ9P2M1 347 aa6.36□□□□□ -1.39
VPS13A-207ENST00000419472 PUF60Q9UHX1 559 aaKnown RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 ZCCHC11Q5TAX3 1644 aaKnown RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.36□□□□□ -1.39
VPS13A-207ENST00000419472 RASSF10A6NK89 507 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms