RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SH2D4AQ9H788 454 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 SLC45A1Q9Y2W3 748 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 TMX2Q9Y320 296 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 PARP14Q460N5 1801 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 A0A0G2JMZ2 1700 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 CYP21A2P08686 494 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 PABPC4Q13310 644 aaKnown RBP eCLIP14.76□□□□□ -0.05
SKA1-203ENST00000417656 KIAA1755Q5JYT7 1200 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 LRRC47Q8N1G4 583 aaKnown RBP14.76□□□□□ -0.05
SKA1-203ENST00000417656 ZNF296Q8WUU4 475 aaPredicted RBP14.76□□□□□ -0.05
SKA1-203ENST00000417656 MAP4K1Q92918 833 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 VCPKMTQ9H867 229 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 MTMR4Q9NYA4 1195 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 NYAP2Q9P242 653 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 PNMA3Q9UL41 463 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 TAF6LQ9Y6J9 622 aa14.76□□□□□ -0.05
SKA1-203ENST00000417656 B4E1Z4 1266 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 RAD21O60216 631 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 TLR2O60603 784 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 TTLL1O95922 423 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 OSBPP22059 807 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 IRX3P78415 501 aaPredicted RBP14.75□□□□□ -0.05
SKA1-203ENST00000417656 SPICE1Q8N0Z3 855 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 SMCR8Q8TEV9 937 aaPredicted RBP14.75□□□□□ -0.05
SKA1-203ENST00000417656 ASCC2Q9H1I8 757 aaPredicted RBP14.75□□□□□ -0.05
SKA1-203ENST00000417656 RPAP3Q9H6T3 665 aaPredicted RBP14.75□□□□□ -0.05
SKA1-203ENST00000417656 PRDM10Q9NQV6 1147 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 IL17RBQ9NRM6 502 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 CLIP2Q9UDT6 1046 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 CPA4Q9UI42 421 aa14.75□□□□□ -0.05
SKA1-203ENST00000417656 RLFQ13129 1914 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 KDM4AO75164 1064 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 NOM1Q5C9Z4 860 aaKnown RBP14.74□□□□□ -0.05
SKA1-203ENST00000417656 LPAR1Q92633 364 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 ESR2Q92731 530 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 GOPCQ9HD26 462 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 STX8Q9UNK0 236 aa14.74□□□□□ -0.05
SKA1-203ENST00000417656 USP17L15C9J2P7 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L13C9JLJ4 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L11C9JVI0 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L18D6R9N7 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L22D6RA61 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L17D6RBQ6 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L19D6RCP7 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L20D6RJB6 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 FKTNO75072 461 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 HOXA7P31268 230 aaPredicted RBP14.73□□□□□ -0.05
SKA1-203ENST00000417656 USP17L24Q0WX57 530 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 STOX1Q6ZVD7 989 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 ZKSCAN3Q9BRR0 538 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 KRT23Q9C075 422 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 TANGO6Q9C0B7 1094 aa14.73□□□□□ -0.05
SKA1-203ENST00000417656 MGAMO43451 1857 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 SLC27A2O14975 620 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 WDR46O15213 610 aaKnown RBP14.72□□□□□ -0.05
SKA1-203ENST00000417656 NDUFB10O96000 172 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 BCRP11274 1271 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 HERVK_113P62684 666 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 PPP4R3BQ5MIZ7 849 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 CREB3L3Q68CJ9 461 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 C17orf99Q6UX52 265 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 RASGRP2Q7LDG7 609 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 CD99L2Q8TCZ2 262 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 NUP88Q99567 741 aaPredicted RBP14.72□□□□□ -0.05
SKA1-203ENST00000417656 CNNM2Q9H8M5 875 aa14.72□□□□□ -0.05
SKA1-203ENST00000417656 E7EWF7 191 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 F5H6K3 240 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 HAX1O00165 279 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 ECM2O94769 699 aaPredicted RBP14.71□□□□□ -0.05
SKA1-203ENST00000417656 NOVP48745 357 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 CAP1Q01518 475 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 SP3Q02447 781 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 KLRC3Q07444 240 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 NECTIN1Q15223 517 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 FAM83BQ5T0W9 1011 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 CATSPERGQ6ZRH7 1159 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 CYB5R4Q7L1T6 521 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 ANKRD13CQ8N6S4 541 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 MKL1Q969V6 931 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 P2RX7Q99572 595 aaKnown RBP14.71□□□□□ -0.05
SKA1-203ENST00000417656 TCP11L1Q9NUJ3 509 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 SYNPO2Q9UMS6 1093 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 GTF3C3Q9Y5Q9 886 aa14.71□□□□□ -0.05
SKA1-203ENST00000417656 COL11A1P12107 1806 aaPredicted RBP14.71□□□□□ -0.06
SKA1-203ENST00000417656 SPDYE16A6NNV3 312 aaPredicted RBP14.7□□□□□ -0.06
SKA1-203ENST00000417656 PEX10O60683 326 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 GCLCP48506 637 aaPredicted RBP14.7□□□□□ -0.06
SKA1-203ENST00000417656 NT5C2P49902 561 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 TRDNQ13061 729 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 COL13A1Q5TAT6 717 aaPredicted RBP14.7□□□□□ -0.06
SKA1-203ENST00000417656 RCSD1Q6JBY9 416 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 RALYLQ86SE5 291 aaKnown RBP14.7□□□□□ -0.06
SKA1-203ENST00000417656 GMCL1P1Q8NEA9 526 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 CHMP4CQ96CF2 233 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 ERO1AQ96HE7 468 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 ARHGAP39Q9C0H5 1083 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 MTMR7Q9Y216 660 aa14.7□□□□□ -0.06
SKA1-203ENST00000417656 TNKSO95271 1327 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 FLOT1O75955 427 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 REC8O95072 547 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms