RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 VTI1AQ96AJ9 217 aa13.32□□□□□ -0.28
UBR4-205ENST00000417040 A6NNZ2 444 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 SORBS3O60504 671 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 PPFIA4O75335 1185 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 TUBB8Q3ZCM7 444 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 ANKRD20A3Q5VUR7 823 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 SYCE1Q8N0S2 351 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 CCDC24Q8N4L8 307 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 RNF34Q969K3 372 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 AMFRQ9UKV5 643 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 PCDHB13Q9Y5F0 798 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 EIF2AK4Q9P2K8 1649 aaKnown RBP13.31□□□□□ -0.28
UBR4-205ENST00000417040 DAPK3O43293 454 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 TECP42680 631 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 IFNAR2P48551 515 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 RBL2Q08999 1139 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 MYSM1Q5VVJ2 828 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 PHLDB2Q86SQ0 1253 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 RNF40O75150 1001 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 TEX11Q8IYF3 940 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 SMYD4Q8IYR2 804 aaPredicted RBP13.31□□□□□ -0.28
UBR4-205ENST00000417040 FTOQ9C0B1 505 aaKnown RBP eCLIP13.31□□□□□ -0.28
UBR4-205ENST00000417040 HYOU1Q9Y4L1 999 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 CASP14P31944 242 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 CXCR5P32302 372 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 FAM133BQ5BKY9 247 aaKnown RBP13.31□□□□□ -0.28
UBR4-205ENST00000417040 STAG1Q8WVM7 1258 aa13.31□□□□□ -0.28
UBR4-205ENST00000417040 METTL22Q9BUU2 404 aaPredicted RBP13.31□□□□□ -0.28
UBR4-205ENST00000417040 GPATCH8Q9UKJ3 1502 aaKnown RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 AOX1Q06278 1338 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 MYCLP12524 364 aaPredicted RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 ETF1P62495 437 aaKnown RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 CCDC89Q8N998 374 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 TSKSQ9UJT2 592 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 TTLL3Q9Y4R7 772 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 TACC3Q9Y6A5 838 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 COG7P83436 770 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 RASSF7Q02833 373 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.3□□□□□ -0.28
UBR4-205ENST00000417040 KLHL14Q9P2G3 628 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 EXOC3O60645 756 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 IL13P35225 146 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 CYP2J2P51589 502 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 NXNQ6DKJ4 435 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 JPH2Q9BR39 696 aaPredicted RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 POGZQ7Z3K3 1410 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 UGGT2Q9NYU1 1516 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 FLOT1O75955 427 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 ADCY8P40145 1251 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 PPP1R2P41236 205 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 POLR2FP61218 127 aaKnown RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 DCUN1D2Q6PH85 259 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 CTAGE3PQ8IX95 158 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 KBTBD3Q8NAB2 608 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 TRIM58Q8NG06 486 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 OR8K1Q8NGG5 319 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 RAB17Q9H0T7 212 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 SCRN1Q12765 414 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 ADCK5Q3MIX3 580 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 CACTINQ8WUQ7 758 aaKnown RBP13.3□□□□□ -0.28
UBR4-205ENST00000417040 FLT4P35916 1363 aa13.3□□□□□ -0.28
UBR4-205ENST00000417040 MRPS25P82663 173 aaKnown RBP13.29□□□□□ -0.28
UBR4-205ENST00000417040 GRAMD1CQ8IYS0 662 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 ARHGAP24Q8N264 748 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 MPHOSPH6Q99547 160 aaKnown RBP13.29□□□□□ -0.28
UBR4-205ENST00000417040 FANCAO15360 1455 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 PALM2Q8IXS6 379 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 PLCH2O75038 1416 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 ARHGEF35A5YM69 484 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 SOWAHDA6NJG2 315 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 SMIM24O75264 130 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 TRPC3Q13507 836 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 EFCC1Q9HA90 598 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 SLC39A2Q9NP94 309 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 HIP1RO75146 1068 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 ADD1P35611 737 aaKnown RBP13.29□□□□□ -0.28
UBR4-205ENST00000417040 RASSF2P50749 326 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 ADCY7P51828 1080 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 NONOQ15233 471 aaKnown RBP eCLIP13.29□□□□□ -0.28
UBR4-205ENST00000417040 TRIM4Q9C037 500 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 NPATQ14207 1427 aa13.29□□□□□ -0.28
UBR4-205ENST00000417040 PUM3Q15397 648 aaKnown RBP13.28□□□□□ -0.28
UBR4-205ENST00000417040 KAZNQ674X7 775 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 RABGAP1Q9Y3P9 1069 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 RNF123Q5XPI4 1314 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 KRT19P08727 400 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 SATB1Q01826 763 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 ABCA10Q8WWZ4 1543 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 SLC7A5Q01650 507 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 DENND2AQ9ULE3 1009 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 DNM3Q9UQ16 869 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 B4DLN1 442 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 TROVE2P10155 538 aaKnown RBP eCLIP13.28□□□□□ -0.28
UBR4-205ENST00000417040 CLCN6P51797 869 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 MRPL12P52815 198 aaKnown RBP13.28□□□□□ -0.28
UBR4-205ENST00000417040 ACRBPQ8NEB7 543 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 TCP11Q8WWU5 503 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 FRMPD2Q68DX3 1309 aaPredicted RBP13.28□□□□□ -0.28
UBR4-205ENST00000417040 EHHADHQ08426 723 aa13.28□□□□□ -0.28
UBR4-205ENST00000417040 DPCR1Q3MIW9 517 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms