RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 PEX10O60683 326 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 DNM1Q05193 864 aaKnown RBP13.62□□□□□ -0.23
SKA3-203ENST00000400018 ABCB5Q2M3G0 1257 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 SYNE3Q6ZMZ3 975 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 DPF2Q92785 391 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 CLEC11AQ9Y240 323 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 CNPY2Q9Y2B0 182 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 FAM205CA6NFA0 338 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 KIF28PB7ZC32 967 aa13.62□□□□□ -0.23
SKA3-203ENST00000400018 HSP90AA2PQ14568 343 aaPredicted RBP13.62□□□□□ -0.23
SKA3-203ENST00000400018 INTS4Q96HW7 963 aaKnown RBP13.62□□□□□ -0.23
SKA3-203ENST00000400018 GZF1Q9H116 711 aaPredicted RBP13.62□□□□□ -0.23
SKA3-203ENST00000400018 DHX16O60231 1041 aaKnown RBP13.61□□□□□ -0.23
SKA3-203ENST00000400018 ATP2B1P20020 1258 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 EVCP57679 992 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 USP48Q86UV5 1035 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 RRAGCQ9HB90 399 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 NMRK2Q9NPI5 230 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 H3BQV1 296 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 ENTPD3O75355 529 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 BRD1O95696 1058 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 IFFO2Q5TF58 517 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 SMARCC2Q8TAQ2 1214 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 OXER1Q8TDS5 423 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 UIMC1Q96RL1 719 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 MAD2L2Q9UI95 211 aa13.61□□□□□ -0.23
SKA3-203ENST00000400018 MYH8P13535 1937 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 FIBPO43427 364 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 LMOD1P29536 600 aaPredicted RBP13.6□□□□□ -0.23
SKA3-203ENST00000400018 ICA1Q05084 483 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 RASGRP4Q8TDF6 673 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 ALG1Q9BT22 464 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 BAG4O95429 457 aaKnown RBP13.6□□□□□ -0.23
SKA3-203ENST00000400018 RPS12P25398 132 aaKnown RBP13.6□□□□□ -0.23
SKA3-203ENST00000400018 MKRN3Q13064 507 aaKnown RBP13.6□□□□□ -0.23
SKA3-203ENST00000400018 NR5A1Q13285 461 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 TYW1BQ6NUM6 668 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 SMCHD1A6NHR9 2005 aa13.6□□□□□ -0.23
SKA3-203ENST00000400018 EPHX2P34913 555 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 CCDC96Q2M329 555 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 DPY19L2Q6NUT2 758 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 DHX36Q9H2U1 1008 aaKnown RBP13.59□□□□□ -0.23
SKA3-203ENST00000400018 ATRNL1Q5VV63 1379 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 GADD45BO75293 160 aaPredicted RBP13.59□□□□□ -0.23
SKA3-203ENST00000400018 ECM2O94769 699 aaPredicted RBP13.59□□□□□ -0.23
SKA3-203ENST00000400018 ZSCAN22P10073 491 aaPredicted RBP13.59□□□□□ -0.23
SKA3-203ENST00000400018 EARS2Q5JPH6 523 aaKnown RBP13.59□□□□□ -0.23
SKA3-203ENST00000400018 TATDN1Q6P1N9 297 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 MTMR14Q8NCE2 650 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 WRNIP1Q96S55 665 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 FBXO28Q9NVF7 368 aa13.59□□□□□ -0.23
SKA3-203ENST00000400018 DNAH12Q6ZR08 3092 aa13.58□□□□□ -0.23
SKA3-203ENST00000400018 DICER1Q9UPY3 1922 aaKnown RBP13.58□□□□□ -0.24
SKA3-203ENST00000400018 KLRF2D3W0D1 207 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 PRPF40AO75400 957 aaKnown RBP13.58□□□□□ -0.24
SKA3-203ENST00000400018 FUT2Q10981 343 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 PKN1Q16512 942 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 KRT26Q7Z3Y9 468 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 CTCFLQ8NI51 663 aaPredicted RBP13.58□□□□□ -0.24
SKA3-203ENST00000400018 GLTPD2A6NH11 291 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 F13A1P00488 732 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 PDHBP11177 359 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 SSRP1Q08945 709 aaKnown RBP13.58□□□□□ -0.24
SKA3-203ENST00000400018 CLMNQ96JQ2 1002 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 C8orf76Q96K31 380 aa13.58□□□□□ -0.24
SKA3-203ENST00000400018 CWC22Q9HCG8 908 aaKnown RBP13.58□□□□□ -0.24
SKA3-203ENST00000400018 IGKV6D-41A0A0C4DH26 115 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 TRIM75PA6NK02 468 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 PHF20L1A8MW92 1017 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 TTLL1O95922 423 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 FOXP4Q8IVH2 680 aaPredicted RBP13.57□□□□□ -0.24
SKA3-203ENST00000400018 COA7Q96BR5 231 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 PGBD1Q96JS3 809 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 PIGSQ96S52 555 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 ZBTB21Q9ULJ3 1066 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 MRVI1Q9Y6F6 885 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 BTBD18B2RXH4 712 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 WNT7AO00755 349 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 RBM10P98175 930 aaKnown RBP13.57□□□□□ -0.24
SKA3-203ENST00000400018 IKQ13123 557 aaPredicted RBP13.57□□□□□ -0.24
SKA3-203ENST00000400018 TMTC3Q6ZXV5 915 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 DGKHQ86XP1 1220 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 FBXL16Q8N461 479 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 RRAGDQ9NQL2 400 aaPredicted RBP13.57□□□□□ -0.24
SKA3-203ENST00000400018 ADARB2Q9NS39 739 aaKnown RBP13.57□□□□□ -0.24
SKA3-203ENST00000400018 WDR19Q8NEZ3 1342 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 CNTNAP5Q8WYK1 1306 aa13.57□□□□□ -0.24
SKA3-203ENST00000400018 USP17L10C9JJH3 530 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 KRT40Q6A162 431 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 CERS3Q8IU89 383 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 ZNF341Q9BYN7 854 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 SSC5DA1L4H1 1573 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 F5H6K3 240 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 MCM4P33991 863 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 CAP2P40123 477 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 KLRC3Q07444 240 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 EHD4Q9H223 541 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 TAF1DQ9H5J8 278 aaPredicted RBP13.56□□□□□ -0.24
SKA3-203ENST00000400018 SWAP70Q9UH65 585 aa13.56□□□□□ -0.24
SKA3-203ENST00000400018 NDUFB10O96000 172 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms