RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CTR9Q6PD62 1173 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 CATSPERGQ6ZRH7 1159 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 C16orf86Q6ZW13 317 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 ANKLE1Q8NAG6 615 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 PI4K2BQ8TCG2 481 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 OTUD7AQ8TE49 926 aaPredicted RBP16.08■□□□□ 0.16
VCX3A-202ENST00000398729 OSBP2Q969R2 916 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 PAGR1Q9BTK6 254 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 RBPJLQ9UBG7 517 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 ZMYND8Q9ULU4 1186 aaPredicted RBP16.08■□□□□ 0.16
VCX3A-202ENST00000398729 DNAH12Q6ZR08 3092 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 PEX10O60683 326 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 AKR1B1P15121 316 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 GNAT2P19087 354 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 MAPK4P31152 587 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 GPR153Q6NV75 609 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 GIMAP6Q6P9H5 292 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 Q7L0L9 218 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 C7orf61Q8IZ16 206 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 RPAP3Q9H6T3 665 aaPredicted RBP16.07■□□□□ 0.16
VCX3A-202ENST00000398729 ARHGEF10LQ9HCE6 1279 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 RABGAP1Q9Y3P9 1069 aa16.07■□□□□ 0.16
VCX3A-202ENST00000398729 RPTORQ8N122 1335 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 A0A1W2PRG0 241 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 GSG1L2A8MUP6 293 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 SMIM22K7EJ46 135 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 GPAA1O43292 621 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 HMGCRP04035 888 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 CCNA1P78396 465 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 ICA1Q05084 483 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 Q3C1V9 767 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 SBK1Q52WX2 424 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 DEFB123Q8N688 67 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 SOCS4Q8WXH5 440 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 FSD1Q9BTV5 496 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 NBPF3Q9H094 633 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 SH2D4AQ9H788 454 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 VCANP13611 3396 aa16.06■□□□□ 0.16
VCX3A-202ENST00000398729 SYN1P17600 705 aa16.05■□□□□ 0.16
VCX3A-202ENST00000398729 LRIT3Q3SXY7 679 aa16.05■□□□□ 0.16
VCX3A-202ENST00000398729 LBX2Q6XYB7 198 aa16.05■□□□□ 0.16
VCX3A-202ENST00000398729 LPAR1Q92633 364 aa16.05■□□□□ 0.16
VCX3A-202ENST00000398729 NUDT12Q9BQG2 462 aa16.05■□□□□ 0.16
VCX3A-202ENST00000398729 CWC22Q9HCG8 908 aaKnown RBP16.05■□□□□ 0.16
VCX3A-202ENST00000398729 HMX1Q9NP08 348 aaPredicted RBP16.05■□□□□ 0.16
VCX3A-202ENST00000398729 SALL3Q9BXA9 1300 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 MINDY4BA8MYZ0 360 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 M0R2C6 588 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 APPP05067 770 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 MAGEA10P43363 369 aaPredicted RBP16.04■□□□□ 0.16
VCX3A-202ENST00000398729 POTEEQ6S8J3 1075 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 GPR142Q7Z601 462 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 TANGO6Q9C0B7 1094 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 PORCNQ9H237 461 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 KANSL2Q9H9L4 492 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 MTMR10Q9NXD2 777 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 OGDHLQ9ULD0 1010 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 TMX2Q9Y320 296 aa16.04■□□□□ 0.16
VCX3A-202ENST00000398729 PLXNB2O15031 1838 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 SPDYE16A6NNV3 312 aaPredicted RBP16.03■□□□□ 0.16
VCX3A-202ENST00000398729 PATL2C9JE40 543 aaKnown RBP16.03■□□□□ 0.16
VCX3A-202ENST00000398729 CNMDO75829 334 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 CYP2B6P20813 491 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 TDO2P48775 406 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 COG2Q14746 738 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 MAP3K21Q5TCX8 1036 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 PLEKHH3Q7Z736 793 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 CLEC10AQ8IUN9 316 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 SIAH1Q8IUQ4 282 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 TRIB2Q92519 343 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 C11orf49Q9H6J7 331 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 VCPKMTQ9H867 229 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 MKNK2Q9HBH9 465 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 HOXC10Q9NYD6 342 aa16.03■□□□□ 0.16
VCX3A-202ENST00000398729 PFASO15067 1338 aa16.02■□□□□ 0.16
VCX3A-202ENST00000398729 XRCC5P13010 732 aaKnown RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 EEF2P13639 858 aaKnown RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 ATP2B2Q01814 1243 aa16.02■□□□□ 0.16
VCX3A-202ENST00000398729 ZMYM1Q5SVZ6 1142 aa16.02■□□□□ 0.16
VCX3A-202ENST00000398729 TRMT44Q8IYL2 757 aaKnown RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 SEC62Q99442 399 aaKnown RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 NACAP1Q9BZK3 213 aa16.02■□□□□ 0.16
VCX3A-202ENST00000398729 RWDD1Q9H446 243 aaPredicted RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.16
VCX3A-202ENST00000398729 EPB41L4AQ9HCS5 686 aaPredicted RBP16.02■□□□□ 0.16
VCX3A-202ENST00000398729 ROBO3Q96MS0 1386 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 RGS2P41220 211 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 PDE1AP54750 535 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 KIAA1755Q5JYT7 1200 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 MORN1Q5T089 497 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 WDR78Q5VTH9 848 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 IFNL3Q8IZI9 196 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 TDHQ8IZJ6 230 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 SPICE1Q8N0Z3 855 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 STK11IPQ8N1F8 1099 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 EVI5LQ96CN4 794 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 BTBD7Q9P203 1132 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 STXBP5LQ9Y2K9 1186 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 IVNS1ABPQ9Y6Y0 642 aa16.01■□□□□ 0.15
VCX3A-202ENST00000398729 WDR46O15213 610 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms