RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CNMDO75829 334 aa8.27□□□□□ -1.08
LIMA1-202ENST00000394943 MCM5P33992 734 aa8.27□□□□□ -1.08
LIMA1-202ENST00000394943 SREBF2Q12772 1141 aa8.27□□□□□ -1.08
LIMA1-202ENST00000394943 COL9A3Q14050 684 aaPredicted RBP8.27□□□□□ -1.08
LIMA1-202ENST00000394943 DEFB115Q30KQ5 88 aa8.27□□□□□ -1.08
LIMA1-202ENST00000394943 BRI3BPQ8WY22 251 aa8.27□□□□□ -1.08
LIMA1-202ENST00000394943 ZKSCAN4Q969J2 545 aaPredicted RBP8.27□□□□□ -1.08
LIMA1-202ENST00000394943 ZNF274Q96GC6 653 aaPredicted RBP8.27□□□□□ -1.08
LIMA1-202ENST00000394943 USP17L10C9JJH3 530 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 UBE2Q2LH0YL09 131 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 ALDH1A1P00352 501 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 TFAP4Q01664 338 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 SHROOM1Q2M3G4 852 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-202ENST00000394943 IFNL1Q8IU54 200 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF526Q8TF50 670 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-202ENST00000394943 SNX21Q969T3 373 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 RIOX1Q9H6W3 641 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 PNMA2Q9UL42 364 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 CA12O43570 354 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 SLURP2P0DP57 97 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 EEF2P13639 858 aaKnown RBP8.27□□□□□ -1.09
LIMA1-202ENST00000394943 IRF5Q13568 498 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 SEPT2Q15019 361 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 PRAMEF18Q5VWM3 479 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 MOB2Q70IA6 237 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 TMEM47Q9BQJ4 181 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 RANBP17Q9H2T7 1088 aaKnown RBP8.27□□□□□ -1.09
LIMA1-202ENST00000394943 ARHGEF10LQ9HCE6 1279 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 CABP5Q9NP86 173 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 ANO2Q9NQ90 1003 aa8.27□□□□□ -1.09
LIMA1-202ENST00000394943 BCRP11274 1271 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 MIGA2Q7L4E1 593 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF444Q8N0Y2 327 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-202ENST00000394943 SHCBP1Q8NEM2 672 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 FAM217BQ9NTX9 383 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-202ENST00000394943 MAD2L2Q9UI95 211 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 HPS5Q9UPZ3 1129 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 FRMPD4Q14CM0 1322 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 CALM1P0DP23 149 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 CALM2P0DP24 149 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 CALM3P0DP25 149 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 PDHBP11177 359 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 MCCP23508 829 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 VEGFBP49765 207 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 HUNKP57058 714 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 CRACR2BQ8N4Y2 399 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-202ENST00000394943 SLC10A4Q96EP9 437 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 LZTS2Q9BRK4 669 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 SPZ1Q9BXG8 430 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 PICK1Q9NRD5 415 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 LOC102724159A0A0B4J2E5 919 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 ZKSCAN1P17029 563 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-202ENST00000394943 ICA1Q05084 483 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 PWP2Q15269 919 aaKnown RBP8.26□□□□□ -1.09
LIMA1-202ENST00000394943 ASPRV1Q53RT3 343 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 C17orf99Q6UX52 265 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 FAM160B2Q86V87 743 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 MB21D1Q8N884 522 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 CAPNS2Q96L46 248 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 GOPCQ9HD26 462 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 WBP1LQ9NX94 342 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 FEM1BQ9UK73 627 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 TNKSO95271 1327 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 STK36Q9NRP7 1315 aa8.26□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF543Q08ER8 600 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 INCENPQ9NQS7 918 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 ZSWIM8A7E2V4 1837 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 MINDY4BA8MYZ0 360 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 TSPY3P0CV98 308 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 TSPY8P0CW00 308 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 VCAM1P19320 739 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 DSG3P32926 999 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 NTRK3Q16288 839 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 SLC35G1Q2M3R5 365 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 GPATCH4Q5T3I0 446 aaKnown RBP8.25□□□□□ -1.09
LIMA1-202ENST00000394943 NBPF11Q86T75 865 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP6NLQ92738 828 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 ELP3Q9H9T3 547 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 MKNK2Q9HBH9 465 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 B4E1Z4 1266 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L15C9J2P7 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L13C9JLJ4 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L11C9JVI0 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L18D6R9N7 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L22D6RA61 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L17D6RBQ6 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L19D6RCP7 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L20D6RJB6 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 COPB2P35606 906 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 USP17L24Q0WX57 530 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 RABEP1Q15276 862 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 ACER1Q8TDN7 264 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 C22orf23Q9BZE7 217 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 TANGO6Q9C0B7 1094 aa8.25□□□□□ -1.09
LIMA1-202ENST00000394943 FAM196BA6NMK8 535 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 BTBD19C9JJ37 291 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 hCG_1984214I3L0E3 225 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 IGF2BP3O00425 579 aaKnown RBP eCLIP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 PRC1O43663 620 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 KDM4AO75164 1064 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms