RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ANTXR1Q9H6X2 564 aa3.97□□□□□ -1.77
VPS13A-206ENST00000376646 SRFP11831 508 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 ERCC3P19447 782 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 GDNFP39905 211 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 MESP2Q0VG99 397 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 PWP1Q13610 501 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 MPZL3Q6UWV2 235 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 PIWIL2Q8TC59 973 aaKnown RBP3.96□□□□□ -1.78
VPS13A-206ENST00000376646 DIRC2Q96SL1 478 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 C19orf44Q9H6X5 657 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 DUSP13Q9UII6 198 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 PCDHA11Q9Y5I1 949 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 SLC22A31A6NKX4 558 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 GREM1O60565 184 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 FARP2O94887 1054 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-206ENST00000376646 UBOX5O94941 541 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 AFMP43652 599 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 EGR3Q06889 387 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 KRTAP19-4Q3LI73 84 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 SEZ6Q53EL9 994 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 TIGD5Q53EQ6 642 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 COX4I2Q96KJ9 171 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 CCDC74BQ96LY2 380 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 TMEM59LQ9UK28 342 aa3.96□□□□□ -1.78
VPS13A-206ENST00000376646 GLI1P08151 1106 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 ZNF16P17020 682 aaPredicted RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 LTKP29376 864 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 GALK1P51570 392 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 CLCQ05315 142 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 SNW1Q13573 536 aaKnown RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 CWF19L2Q2TBE0 894 aaKnown RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 ZNF326Q5BKZ1 582 aaKnown RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 TMEM67Q5HYA8 995 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 OVOS1Q6IE37 1185 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 GK5Q6ZS86 529 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 TMPRSS7Q7RTY8 843 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 TSPYL5Q86VY4 417 aaPredicted RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 RNF141Q8WVD5 230 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 ZNF512BQ96KM6 892 aaPredicted RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 GPR62Q9BZJ7 368 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 EBF1Q9UH73 591 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 MINPP1Q9UNW1 487 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 SUPT16HQ9Y5B9 1047 aaKnown RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 FAM86C2PA6NEL3 165 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 GBP1P32455 592 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 DIEXFQ68CQ4 756 aaKnown RBP3.95□□□□□ -1.78
VPS13A-206ENST00000376646 HS2ST1Q7LGA3 356 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 KSR1Q8IVT5 923 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 KCNQ5Q9NR82 932 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 GPATCH2Q9NW75 528 aa3.95□□□□□ -1.78
VPS13A-206ENST00000376646 MCM4P33991 863 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 TMC3Q7Z5M5 1100 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 TMEM87AQ8NBN3 555 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 VWCEQ96DN2 955 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 TRIT1Q9H3H1 467 aaKnown RBP3.94□□□□□ -1.78
VPS13A-206ENST00000376646 KCNH3Q9ULD8 1083 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 PCDHGB7Q9Y5F8 929 aa3.94□□□□□ -1.78
VPS13A-206ENST00000376646 KRTAP9-7A8MTY7 169 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 RGS13O14921 159 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 ZGLP1P0C6A0 271 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 RAG1P15918 1043 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 ZNF394Q53GI3 561 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 TMCO4Q5TGY1 634 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 DBX2Q6ZNG2 339 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 ABHD4Q8TB40 342 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 NSUN3Q9H649 340 aaKnown RBP3.93□□□□□ -1.78
VPS13A-206ENST00000376646 SP110Q9HB58 689 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 EFEMP2O95967 443 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 APOBRQ0VD83 1088 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 MYLIPQ8WY64 445 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 EAF1Q96JC9 268 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-206ENST00000376646 LRRC3Q9BY71 257 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 BACH2Q9BYV9 841 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 RNF32Q9H0A6 362 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 GMIPQ9P107 970 aa3.93□□□□□ -1.78
VPS13A-206ENST00000376646 ZPBP2Q6X784 338 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 SYDE1Q6ZW31 735 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-206ENST00000376646 ATG4CQ96DT6 458 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 ASPNQ9BXN1 380 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 HPXP02790 462 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 RAC2P15153 192 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 TEKQ02763 1124 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 NMIQ13287 307 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-206ENST00000376646 PKN1Q16512 942 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 CLEC16AQ2KHT3 1053 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 FAM84AQ96KN4 292 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 SLC38A3Q99624 504 aa3.92□□□□□ -1.78
VPS13A-206ENST00000376646 RBM47A0AV96 593 aaKnown RBP3.91□□□□□ -1.78
VPS13A-206ENST00000376646 MEIS1O00470 390 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 FKTNO75072 461 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 ATE1O95260 518 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 KRT1P04264 644 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 MFAP1P55081 439 aaKnown RBP3.91□□□□□ -1.78
VPS13A-206ENST00000376646 CHMP4BP1P59074 171 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 NBPF12Q5TAG4 269 aaPredicted RBP3.91□□□□□ -1.78
VPS13A-206ENST00000376646 TMEM192Q8IY95 271 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 SPON2Q9BUD6 331 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 FOXP3Q9BZS1 431 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 EHMT1Q9H9B1 1298 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 FAM53CQ9NYF3 392 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms