RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MYCLP12524 364 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ATP6V1C1P21283 382 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 EXOSC9Q06265 439 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 MAP3K12Q12852 859 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 KRT81Q14533 505 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 LUZP2Q86TE4 346 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TRIM50Q86XT4 487 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SENP1Q9P0U3 644 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 RSPH14Q9UHP6 348 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PAIP2BQ9ULR5 123 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 MAFFQ9ULX9 164 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PCDHGA3Q9Y5H0 932 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 AGRPO00253 132 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGEF9O43307 516 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 BUB1BO60566 1050 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TSC22D2O75157 780 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ERN1O75460 977 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ELF1P32519 619 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGAP4P98171 946 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CLCA4Q14CN2 919 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ZYXQ15942 572 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 WHAMMP3Q1A5X7 153 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TIGD7Q6NT04 549 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ENAHQ8N8S7 591 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 KIFAP3Q92845 792 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 GFM2Q969S9 779 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 DNAJC25Q9H1X3 360 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TMOD3Q9NYL9 352 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PHLDB1Q86UU1 1377 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PTPDC1A2A3K4 754 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TRIM64BA6NI03 449 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TMEM232C9JQI7 657 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PRPF4O43172 522 aaKnown RBP eCLIP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 DDHD2O94830 711 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 NCAM1P13591 858 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SLC5A1P13866 664 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 RAPGEF1Q13905 1077 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TOMM20Q15388 145 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SEL1L2Q5TEA6 688 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 LMNTD2Q8IXW0 634 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CNGB3Q9NQW8 809 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 HYOU1Q9Y4L1 999 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 BIN1O00499 593 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ZMYND10O75800 440 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SERPIND1P05546 499 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 EEF1DP29692 281 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 STAT6P42226 847 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 GUCA1AP43080 201 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TNNI2P48788 182 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 STX1AQ16623 288 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 NME8Q8N427 588 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CSRNP2Q9H175 543 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 LZTFL1Q9NQ48 299 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PRG3Q9Y2Y8 225 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 DDX39AO00148 427 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CREB3O43889 395 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SERPINB6P35237 376 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 SLC25A24Q6NUK1 477 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PDXDC1Q6P996 788 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 FGD2Q7Z6J4 655 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ELMOD1Q8N336 334 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 KIF18AQ8NI77 898 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 FAM71BQ8TC56 605 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 MMS19Q96T76 1030 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CAPN10Q9HC96 672 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 MTRF1LQ9UGC7 380 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 GTF2A1LQ9UNN4 478 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 EVC2Q86UK5 1308 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 M0R2C6 588 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RLBP1P12271 317 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SCG2P13521 617 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 KRT15P19012 456 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SOX5P35711 763 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ARL4CP56559 192 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 CWF19L2Q2TBE0 894 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 HSP90AA4PQ58FG1 418 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 MFN1Q8IWA4 741 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 TSR2Q969E8 191 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 JAKMIP1Q96N16 626 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 KLC2Q9H0B6 622 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 EXO5Q9H790 373 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SLC38A10Q9HBR0 1119 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ABI2Q9NYB9 513 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 DBR1Q9UK59 544 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 FBXL5Q9UKA1 691 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RPH3AQ9Y2J0 694 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RB1CC1Q8TDY2 1594 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 EVI5O60447 810 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 TBC1D8O95759 1140 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 CALML3P27482 149 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 PHKA1P46020 1223 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ZNF568Q3ZCX4 644 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 LGSNQ5TDP6 509 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SNX30Q5VWJ9 437 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 DCUN1D2Q6PH85 259 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 TTLL7Q6ZT98 887 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 APOL6Q9BWW8 343 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RTEL1Q9NZ71 1219 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 FHAD1B1AJZ9 1412 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RSPH10B2B2RC85 870 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms