RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 TMEM67Q5HYA8 995 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 KIAA1755Q5JYT7 1200 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 RCSD1Q6JBY9 416 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 BLOC1S2Q6QNY1 142 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 FASTKD5Q7L8L6 764 aaKnown RBP16.34■□□□□ 0.21
TPM3-211ENST00000368531 ENAHQ8N8S7 591 aaPredicted RBP16.34■□□□□ 0.21
TPM3-211ENST00000368531 PTPN18Q99952 460 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 TMEM47Q9BQJ4 181 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 C22orf23Q9BZE7 217 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 GOPCQ9HD26 462 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 GPHNQ9NQX3 736 aaPredicted RBP16.34■□□□□ 0.21
TPM3-211ENST00000368531 LOC285556D6RIA3 1793 aa16.33■□□□□ 0.21
TPM3-211ENST00000368531 BTBD19C9JJ37 291 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 TOP1P11387 765 aaKnown RBP16.33■□□□□ 0.2
TPM3-211ENST00000368531 PSMA5P28066 241 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 NT5C2P49902 561 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 USP14P54578 494 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 MOGSQ13724 837 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 SART3Q15020 963 aaKnown RBP16.33■□□□□ 0.2
TPM3-211ENST00000368531 CCDC178Q5BJE1 867 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 SH3D19Q5HYK7 790 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 PPP4R3BQ5MIZ7 849 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 TREML2Q5T2D2 321 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 IFIT1BQ5T764 474 aaKnown RBP16.33■□□□□ 0.2
TPM3-211ENST00000368531 DHX32Q7L7V1 743 aaKnown RBP16.33■□□□□ 0.2
TPM3-211ENST00000368531 MKL1Q969V6 931 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 VCPKMTQ9H867 229 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 SENP2Q9HC62 589 aa16.33■□□□□ 0.2
TPM3-211ENST00000368531 ISY1Q9ULR0 285 aaKnown RBP16.33■□□□□ 0.2
TPM3-211ENST00000368531 F5H6K3 240 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 IGF2BP3O00425 579 aaKnown RBP eCLIP16.32■□□□□ 0.2
TPM3-211ENST00000368531 TM4SF4P48230 202 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 INHBEP58166 350 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 KLRC3Q07444 240 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 WTAPQ15007 396 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 SEC23AQ15436 765 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 SLFN13Q68D06 897 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 GPAT2Q6NUI2 795 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 SAMD1Q6SPF0 538 aaPredicted RBP16.32■□□□□ 0.2
TPM3-211ENST00000368531 DGKHQ86XP1 1220 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 IFNL1Q8IU54 200 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 FAM43AQ8N2R8 423 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 TTC14Q96N46 770 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 NUP88Q99567 741 aaPredicted RBP16.32■□□□□ 0.2
TPM3-211ENST00000368531 UPF3BQ9BZI7 483 aaKnown RBP16.32■□□□□ 0.2
TPM3-211ENST00000368531 KAT14Q9H8E8 782 aa16.32■□□□□ 0.2
TPM3-211ENST00000368531 TESPA1A2RU30 521 aaPredicted RBP16.31■□□□□ 0.2
TPM3-211ENST00000368531 NDUFB10O96000 172 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 HMGB1P09429 215 aaKnown RBP16.31■□□□□ 0.2
TPM3-211ENST00000368531 VCAM1P19320 739 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 RPS6KB1P23443 525 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 FGD1P98174 961 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 EXOSC10Q01780 885 aaKnown RBP16.31■□□□□ 0.2
TPM3-211ENST00000368531 NFXL1Q6ZNB6 911 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 PROCA1Q8NCQ7 364 aaPredicted RBP16.31■□□□□ 0.2
TPM3-211ENST00000368531 IGDCC4Q8TDY8 1250 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 TMEM87BQ96K49 555 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 RPAP3Q9H6T3 665 aaPredicted RBP16.31■□□□□ 0.2
TPM3-211ENST00000368531 AGTPBP1Q9UPW5 1226 aa16.31■□□□□ 0.2
TPM3-211ENST00000368531 THSD7BQ9C0I4 1608 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 PDHXO00330 501 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 NOVP48745 357 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 ANAPC15P60006 121 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 FAM83BQ5T0W9 1011 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 OTUD7BQ6GQQ9 843 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 RUFY3Q7L099 469 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 RASGRP2Q7LDG7 609 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 REM2Q8IYK8 340 aaPredicted RBP16.3■□□□□ 0.2
TPM3-211ENST00000368531 ANKS1AQ92625 1134 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 C12orf42Q96LP6 360 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 TANGO6Q9C0B7 1094 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 ZSWIM6Q9HCJ5 1215 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 CYP46A1Q9Y6A2 500 aa16.3■□□□□ 0.2
TPM3-211ENST00000368531 SH2B2O14492 632 aaPredicted RBP16.29■□□□□ 0.2
TPM3-211ENST00000368531 CCDC96Q2M329 555 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 Q6ZUG5 572 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 ANKRD23Q86SG2 305 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 PNMA1Q8ND90 353 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 LPAR1Q92633 364 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 TM6SF1Q9BZW5 370 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 LY9Q9HBG7 655 aa16.29■□□□□ 0.2
TPM3-211ENST00000368531 NAP1L2Q9ULW6 460 aaPredicted RBP16.29■□□□□ 0.2
TPM3-211ENST00000368531 FRMPD2Q68DX3 1309 aaPredicted RBP16.28■□□□□ 0.2
TPM3-211ENST00000368531 CCDC69A6NI79 296 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 TRPA1O75762 1119 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 CYP2C8P10632 490 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 OSBPP22059 807 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 SLC1A4P43007 532 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 IRX3P78415 501 aaPredicted RBP16.28■□□□□ 0.2
TPM3-211ENST00000368531 TAF1CQ15572 869 aaPredicted RBP16.28■□□□□ 0.2
TPM3-211ENST00000368531 KCTD1Q719H9 257 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 RAB11FIP4Q86YS3 637 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 GMCL1P1Q8NEA9 526 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 LARP6Q9BRS8 491 aaKnown RBP16.28■□□□□ 0.2
TPM3-211ENST00000368531 MYL10Q9BUA6 226 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 GPCPD1Q9NPB8 672 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 PDRG1Q9NUG6 133 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 RNF186Q9NXI6 227 aa16.28■□□□□ 0.2
TPM3-211ENST00000368531 WDR19Q8NEZ3 1342 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L15C9J2P7 530 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms