RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 PABPC4Q13310 644 aaKnown RBP eCLIP17.84■□□□□ 0.45
SMPDL3A-201ENST00000368440 RNF41Q9H4P4 317 aaPredicted RBP17.84■□□□□ 0.45
SMPDL3A-201ENST00000368440 RPAP3Q9H6T3 665 aaPredicted RBP17.84■□□□□ 0.45
SMPDL3A-201ENST00000368440 PNMA3Q9UL41 463 aa17.84■□□□□ 0.45
SMPDL3A-201ENST00000368440 MGAMO43451 1857 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 OSBPP22059 807 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 IRX3P78415 501 aaPredicted RBP17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 SP3Q02447 781 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 CASC1Q6TDU7 716 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 KIAA1211Q6ZU35 1233 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 LRRC47Q8N1G4 583 aaKnown RBP17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 CD99L2Q8TCZ2 262 aa17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 SMCR8Q8TEV9 937 aaPredicted RBP17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 P2RX7Q99572 595 aaKnown RBP17.83■□□□□ 0.44
SMPDL3A-201ENST00000368440 B4E1Z4 1266 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 PEX10O60683 326 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 ECM2O94769 699 aaPredicted RBP17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 TTLL1O95922 423 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 BCRP11274 1271 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 PCP11498 1178 aaKnown RBP17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 POTEEQ6S8J3 1075 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 CATSPERGQ6ZRH7 1159 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 A0A0G2JMZ2 1700 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L15C9J2P7 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L13C9JLJ4 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L11C9JVI0 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L18D6R9N7 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L22D6RA61 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L17D6RBQ6 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L19D6RCP7 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L20D6RJB6 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 RAD21O60216 631 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 USP17L24Q0WX57 530 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 LPAR1Q92633 364 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 MKL1Q969V6 931 aa17.82■□□□□ 0.44
SMPDL3A-201ENST00000368440 KDM4AO75164 1064 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 HERVK_113P62684 666 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 STOX1Q6ZVD7 989 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 ANKRD13CQ8N6S4 541 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 NUP88Q99567 741 aaPredicted RBP17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 ZKSCAN3Q9BRR0 538 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 ARHGAP39Q9C0H5 1083 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 GOPCQ9HD26 462 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 STX8Q9UNK0 236 aa17.81■□□□□ 0.44
SMPDL3A-201ENST00000368440 F5H6K3 240 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 NDUFB10O96000 172 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 CTGFP29279 349 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 NOVP48745 357 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 KLRC3Q07444 240 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 ESR2Q92731 530 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 TANGO6Q9C0B7 1094 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 COL11A1P12107 1806 aaPredicted RBP17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 WDR46O15213 610 aaKnown RBP17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 RASGRP2Q7LDG7 609 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 CHMP4CQ96CF2 233 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 TCP11L1Q9NUJ3 509 aa17.8■□□□□ 0.44
SMPDL3A-201ENST00000368440 E7EWF7 191 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 SLC27A2O14975 620 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 LACTBP83111 547 aaPredicted RBP17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 NECTIN1Q15223 517 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 FAM83BQ5T0W9 1011 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 RCSD1Q6JBY9 416 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 ERO1AQ96HE7 468 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 TXNRD2Q9NNW7 524 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 ZSWIM5Q9P217 1185 aa17.79■□□□□ 0.44
SMPDL3A-201ENST00000368440 SPDYE16A6NNV3 312 aaPredicted RBP17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 GCLCP48506 637 aaPredicted RBP17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 CREB3L3Q68CJ9 461 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 CYB5R4Q7L1T6 521 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 KRT23Q9C075 422 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 CNNM2Q9H8M5 875 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 FBXO28Q9NVF7 368 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 GMCL1P1Q8NEA9 526 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 TMEM47Q9BQJ4 181 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 PAGR1Q9BTK6 254 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 RBPJLQ9UBG7 517 aa17.78■□□□□ 0.44
SMPDL3A-201ENST00000368440 CNMDO75829 334 aa17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 COL9A3Q14050 684 aaPredicted RBP17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 FAM110CQ1W6H9 321 aa17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 CTU1Q7Z7A3 348 aaKnown RBP17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 SYNPO2Q9UMS6 1093 aa17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 MTMR7Q9Y216 660 aa17.77■□□□□ 0.43
SMPDL3A-201ENST00000368440 FLOT1O75955 427 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 PPP4R3BQ5MIZ7 849 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 SLFN13Q68D06 897 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 OTOP1Q7RTM1 612 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 TRIM47Q96LD4 638 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 MORF4L1Q9UBU8 362 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 TRIM17Q9Y577 477 aa17.76■□□□□ 0.43
SMPDL3A-201ENST00000368440 COG2Q14746 738 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 Q3C1V9 767 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 LBX2Q6XYB7 198 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 ATG4CQ96DT6 458 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 ZSCAN10Q96SZ4 725 aaPredicted RBP17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 TSHZ2Q9NRE2 1034 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 BTBD7Q9P203 1132 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 TNKSO95271 1327 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 TOP1P11387 765 aaKnown RBP17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 DSG3P32926 999 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms