RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 THAP12O43422 761 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 TYW1BQ6NUM6 668 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 CLEC11AQ9Y240 323 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 ADCY7P51828 1080 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 SF3A3Q12874 501 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 C16orf71Q8IYS4 520 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 CAPS2Q9BXY5 557 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 KCNG1Q9UIX4 513 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 NIP7Q9Y221 180 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 PPME1Q9Y570 386 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 MYH11P35749 1972 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 GOLGA8QA0A0J9YX86 632 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 GOLGA8OA6NCC3 632 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 GOLGA8NF8WBI6 632 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 RLBP1P12271 317 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 SND1Q7KZF4 910 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 MAPK8IP1Q9UQF2 711 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 JAG2Q9Y219 1238 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 LONRF2Q1L5Z9 754 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 RIC8AQ9NPQ8 531 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 TRAPPC8Q9Y2L5 1435 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 MAST1Q9Y2H9 1570 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 VGLL3A8MV65 326 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 KRT19P08727 400 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 ETF1P62495 437 aaKnown RBP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 NCAPH2Q6IBW4 605 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 SCYL1Q96KG9 808 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 CROCCQ5TZA2 2017 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 GRIN2AQ12879 1464 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 MBD4O95243 580 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 BRDTQ58F21 947 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-208ENST00000367256 GDAP1L1Q96MZ0 367 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 NLRP3Q96P20 1036 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 NFE2L3Q9Y4A8 694 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 FRMD3A2A2Y4 597 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 FOXO3O43524 673 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 PFDN1O60925 122 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 TCP1P17987 556 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 DRC3Q9H069 523 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 CASP2P42575 452 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 KLHL30Q0D2K2 578 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 TTC38Q5R3I4 469 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 CTAGE3PQ8IX95 158 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MYCT1Q8N699 235 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 LRGUKQ96M69 825 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 LSM14BQ9BX40 385 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BICC1Q9H694 974 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 TAB2Q9NYJ8 693 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 PA2G4Q9UQ80 394 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 ABCC2Q92887 1545 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 ECM2O94769 699 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BRD1O95696 1058 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BAG2O95816 211 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MORC4Q8TE76 937 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 EXOC4Q96A65 974 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BIN2Q9UBW5 565 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 URB2Q14146 1524 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 GPATCH8Q9UKJ3 1502 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MX2P20592 715 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 ADCY8P40145 1251 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 RAB20Q9NX57 234 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 AMOTL2Q9Y2J4 779 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 S100BP04271 92 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MTX1Q13505 466 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 JDP2Q8WYK2 163 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 HAUS1Q96CS2 278 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 RIOK1Q9BRS2 568 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MAGEF1Q9HAY2 307 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 PHLPP2Q6ZVD8 1323 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 CDR2Q01850 454 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 TYW1Q9NV66 732 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 TMOD4Q9NZQ9 345 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 AMFRQ9UKV5 643 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 KRIT1O00522 736 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 GNGT1P63211 74 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 LMBR1LQ6UX01 489 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 PALM2Q8IXS6 379 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 SLF1Q9BQI6 1058 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 EPS15L1Q9UBC2 864 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 NUB1Q9Y5A7 615 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 RIMS2Q9UQ26 1411 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 DDX39AO00148 427 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 SGSM2O43147 1006 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 PRPF6O94906 941 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 RFX1P22670 979 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 MMEL1Q495T6 779 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BBOF1Q8ND07 529 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 BANK1Q8NDB2 785 aa8.03□□□□□ -1.12
SYNE1-208ENST00000367256 CNOT10Q9H9A5 744 aaKnown RBP8.03□□□□□ -1.12
SYNE1-208ENST00000367256 EXOC3O60645 756 aa8.02□□□□□ -1.12
SYNE1-208ENST00000367256 ARHGAP4P98171 946 aa8.02□□□□□ -1.12
SYNE1-208ENST00000367256 COPS6Q7L5N1 327 aa8.02□□□□□ -1.12
SYNE1-208ENST00000367256 RBM17Q96I25 401 aaKnown RBP8.02□□□□□ -1.12
SYNE1-208ENST00000367256 HAUS4Q9H6D7 363 aa8.02□□□□□ -1.12
SYNE1-208ENST00000367256 LRRD1A4D1F6 860 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 RBM6P78332 1123 aaKnown RBP8.02□□□□□ -1.13
SYNE1-208ENST00000367256 C2CD5Q86YS7 1000 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 PLEKHA4Q9H4M7 779 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 HYOU1Q9Y4L1 999 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms