RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 MBIPQ9NS73 344 aa19.01■□□□□ 0.63
COL27A1-201ENST00000356083 TSNAXIP1Q2TAA8 658 aa19.01■□□□□ 0.63
COL27A1-201ENST00000356083 ZBTB41Q5SVQ8 909 aa19.01■□□□□ 0.63
COL27A1-201ENST00000356083 RSRC2Q7L4I2 434 aaKnown RBP19.01■□□□□ 0.63
COL27A1-201ENST00000356083 CPSF3Q9UKF6 684 aaKnown RBP19.01■□□□□ 0.63
COL27A1-201ENST00000356083 LRFN2Q9ULH4 789 aa19.01■□□□□ 0.63
COL27A1-201ENST00000356083 CWF19L2Q2TBE0 894 aaKnown RBP19.01■□□□□ 0.63
COL27A1-201ENST00000356083 ZNF467Q7Z7K2 595 aaPredicted RBP19.01■□□□□ 0.63
COL27A1-201ENST00000356083 IPO11Q9UI26 975 aaKnown RBP19.01■□□□□ 0.63
COL27A1-201ENST00000356083 FAM89AQ96GI7 184 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19■□□□□ 0.632e-7■■□□□ 11.4
COL27A1-201ENST00000356083 PEX26Q7Z412 305 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 IFT20Q8IY31 132 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 BICC1Q9H694 974 aaKnown RBP19■□□□□ 0.63
COL27A1-201ENST00000356083 PPIP5K2O43314 1243 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 CCNL1Q9UK58 526 aaPredicted RBP19■□□□□ 0.63
COL27A1-201ENST00000356083 SNX29Q8TEQ0 813 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 SMARCA4P51532 1647 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 STAM2O75886 525 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 MUM1Q2TAK8 710 aa19■□□□□ 0.63
COL27A1-201ENST00000356083 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19■□□□□ 0.633e-8■■■■■ 33.1
COL27A1-201ENST00000356083 USH1CQ9Y6N9 552 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 ADPGKQ9BRR6 497 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 SUCLA2Q9P2R7 463 aaPredicted RBP18.99■□□□□ 0.63
COL27A1-201ENST00000356083 TAF5LO75529 589 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 MIER3Q7Z3K6 550 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 CCDC13Q8IYE1 715 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 INPP5FQ9Y2H2 1132 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 FAM135AQ9P2D6 1515 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 SLC9C1Q4G0N8 1177 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 ZNF654Q8IZM8 581 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 ABT1Q9ULW3 272 aaKnown RBP18.99■□□□□ 0.63
COL27A1-201ENST00000356083 AKT3Q9Y243 479 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 HIBADHP31937 336 aaKnown RBP18.99■□□□□ 0.63
COL27A1-201ENST00000356083 DPP9Q86TI2 863 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 SYNDIG1Q9H7V2 258 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 PRDM5Q9NQX1 630 aaPredicted RBP18.99■□□□□ 0.63
COL27A1-201ENST00000356083 GDAP1Q8TB36 358 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 TGFBRAP1Q8WUH2 860 aa18.99■□□□□ 0.63
COL27A1-201ENST00000356083 APBA3O96018 575 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 LIG4P49917 911 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 EVCP57679 992 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 ARHGEF6Q15052 776 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 FAM180AQ6UWF9 173 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 FRMPD2Q68DX3 1309 aaPredicted RBP18.98■□□□□ 0.63
COL27A1-201ENST00000356083 ZBBXA8MT70 800 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 RNF8O76064 485 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 SLC13A4Q9UKG4 626 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 FAM95CA0A1B0GW59 222 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 PRDM1O75626 825 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 PRIMPOLQ96LW4 560 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 LRGUKQ96M69 825 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 ACEP12821 1306 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 HEXIM1O94992 359 aaKnown RBP18.98■□□□□ 0.63
COL27A1-201ENST00000356083 PLCD1P51178 756 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 UVSSAQ2YD98 709 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 STAMQ92783 540 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 BTG4Q9NY30 223 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 V9GY48 417 aaPredicted RBP18.98■□□□□ 0.63
COL27A1-201ENST00000356083 GAS7O60861 476 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 IL2RBP14784 551 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 SCHIP1Q9P0W5 487 aaPredicted RBP18.98■□□□□ 0.63
COL27A1-201ENST00000356083 GDAP1L1Q96MZ0 367 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 PRPSAP1Q14558 356 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 DLGAP5Q15398 846 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 ORC6Q9Y5N6 252 aa18.98■□□□□ 0.63
COL27A1-201ENST00000356083 PPWD1Q96BP3 646 aaKnown RBP18.97■□□□□ 0.63
COL27A1-201ENST00000356083 TIMM10P62072 90 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 DENND2AQ9ULE3 1009 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 DCPSQ96C86 337 aaKnown RBP18.97■□□□□ 0.63
COL27A1-201ENST00000356083 LMNB1P20700 586 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 GUCY2FP51841 1108 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 CCDC38Q502W7 563 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 LRRIQ4A6NIV6 560 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 RNF113AO15541 343 aaKnown RBP18.97■□□□□ 0.63
COL27A1-201ENST00000356083 TRAPPC10P48553 1259 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 CREB3L3Q68CJ9 461 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 NLRC4Q9NPP4 1024 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 SYNRGQ9UMZ2 1314 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 TMEM259Q4ZIN3 620 aa18.97■□□□□ 0.63
COL27A1-201ENST00000356083 TPX2Q9ULW0 747 aaKnown RBP18.97■□□□□ 0.63
COL27A1-201ENST00000356083 LRRC9Q6ZRR7 1453 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 LMTK3Q96Q04 1460 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 ALAS1P13196 640 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 ZBED2Q9BTP6 218 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 FAM98CQ17RN3 349 aaKnown RBP18.96■□□□□ 0.63
COL27A1-201ENST00000356083 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.96■□□□□ 0.635e-7■■□□□ 12.2
COL27A1-201ENST00000356083 CDK13Q14004 1512 aaKnown RBP18.96■□□□□ 0.63
COL27A1-201ENST00000356083 TCP10L2B9ZVM9 353 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 TYW1BQ6NUM6 668 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 CYP26C1Q6V0L0 522 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 HOOK2Q96ED9 719 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 TMOD1P28289 359 aa18.96■□□□□ 0.63
COL27A1-201ENST00000356083 NAPGQ99747 312 aaPredicted RBP18.96■□□□□ 0.63
COL27A1-201ENST00000356083 GBP5Q96PP8 586 aa18.96■□□□□ 0.62
COL27A1-201ENST00000356083 BAIAP2L1Q9UHR4 511 aa18.96■□□□□ 0.62
COL27A1-201ENST00000356083 HABP4Q5JVS0 413 aaKnown RBP18.95■□□□□ 0.62
COL27A1-201ENST00000356083 KRT82Q9NSB4 513 aa18.95■□□□□ 0.62
COL27A1-201ENST00000356083 HACD3Q9P035 362 aa18.95■□□□□ 0.62
COL27A1-201ENST00000356083 TTC21BQ7Z4L5 1316 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms