RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SUPT20HQ8NEM7 779 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 RBM17Q96I25 401 aaKnown RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 RTFDC1Q9BY42 306 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 GBA2Q9HCG7 927 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-201ENST00000355766 LAMB4A4D0S4 1761 aa8.86□□□□□ -0.99
VPS13A-201ENST00000355766 UBN2Q6ZU65 1347 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 SPDYE3A6NKU9 549 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 ZNF157P51786 506 aaPredicted RBP8.85□□□□□ -0.99
VPS13A-201ENST00000355766 RRP1P56182 461 aaKnown RBP8.85□□□□□ -0.99
VPS13A-201ENST00000355766 KIAA2012Q0VF49 1180 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 PKN2Q16513 984 aaKnown RBP8.85□□□□□ -0.99
VPS13A-201ENST00000355766 TMEM132AQ24JP5 1023 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 PRRT3Q5FWE3 981 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 C20orf204Q6ZNR8 217 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 USP48Q86UV5 1035 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 BHMTQ93088 406 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 HINFPQ9BQA5 517 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 BCL2L13Q9BXK5 485 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 PPP1R12CQ9BZL4 782 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 ATP6V0A2Q9Y487 856 aa8.85□□□□□ -0.99
VPS13A-201ENST00000355766 SHTN1A0MZ66 631 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 FAM229AH3BQW9 127 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 TCERG1O14776 1098 aaKnown RBP8.84□□□□□ -0.99
VPS13A-201ENST00000355766 RAD17O75943 681 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 GATA4P43694 442 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 DPYDQ12882 1025 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 PTK7Q13308 1070 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 AAMPQ13685 434 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 TNIP1Q15025 636 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 DLK2Q6UY11 383 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 KRT26Q7Z3Y9 468 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 C2orf69Q8N8R5 385 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 CALR3Q96L12 384 aaKnown RBP8.84□□□□□ -0.99
VPS13A-201ENST00000355766 TMX4Q9H1E5 349 aaPredicted RBP8.84□□□□□ -0.99
VPS13A-201ENST00000355766 DUOX1Q9NRD9 1551 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 IFT57Q9NWB7 429 aa8.84□□□□□ -0.99
VPS13A-201ENST00000355766 CNOT7Q9UIV1 285 aaKnown RBP8.84□□□□□ -0.99
VPS13A-201ENST00000355766 ABCC4O15439 1325 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 MAP3K15Q6ZN16 1313 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 ERVV-1B6SEH8 477 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 ADM5C9JUS6 153 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 H7C1D1 291 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 NTSR2O95665 410 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 NID1P14543 1247 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 ITGB7P26010 798 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 RIPK4P57078 832 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 DPP8Q6V1X1 898 aaPredicted RBP8.83□□□□□ -1
VPS13A-201ENST00000355766 RASAL3Q86YV0 1011 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 CSRNP1Q96S65 589 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 BABAM1Q9NWV8 329 aa8.83□□□□□ -1
VPS13A-201ENST00000355766 YDJCA8MPS7 323 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 GPTP24298 496 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 GNAI1P63096 354 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 HIF1AQ16665 826 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 SUSD4Q5VX71 490 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 ZNF296Q8WUU4 475 aaPredicted RBP8.82□□□□□ -1
VPS13A-201ENST00000355766 HDAC9Q9UKV0 1011 aa8.82□□□□□ -1
VPS13A-201ENST00000355766 FANCIQ9NVI1 1328 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 A6NJR5 290 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 EGFRP00533 1210 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 ZNF853P0CG23 659 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 FXR1P51114 621 aaKnown RBP eCLIP8.81□□□□□ -1
VPS13A-201ENST00000355766 TBC1D8BQ0IIM8 1120 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 PDE3AQ14432 1141 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 RTN1Q16799 776 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 TBC1D10BQ4KMP7 808 aaPredicted RBP8.81□□□□□ -1
VPS13A-201ENST00000355766 FBXO46Q6PJ61 603 aaPredicted RBP8.81□□□□□ -1
VPS13A-201ENST00000355766 KIF6Q6ZMV9 814 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 DPF2Q92785 391 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 DCPSQ96C86 337 aaKnown RBP8.81□□□□□ -1
VPS13A-201ENST00000355766 GSX2Q9BZM3 304 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 SEMA6BQ9H3T3 888 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 IGFLR1Q9H665 355 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 PPP4R2Q9NY27 417 aa8.81□□□□□ -1
VPS13A-201ENST00000355766 LRRC37AA6NMS7 1700 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L15C9J2P7 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L10C9JJH3 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L13C9JLJ4 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L12C9JPN9 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L11C9JVI0 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L21D6R901 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L18D6R9N7 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L22D6RA61 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L17D6RBQ6 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L19D6RCP7 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L20D6RJB6 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 IGFBP4P22692 258 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 USP17L24Q0WX57 530 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 TRIM28Q13263 835 aaKnown RBP8.8□□□□□ -1
VPS13A-201ENST00000355766 IER5Q5VY09 327 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 TTLL7Q6ZT98 887 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 ANKMY2Q8IV38 441 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 ZNF34Q8IZ26 560 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 PHACTR3Q96KR7 559 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 UBE2OQ9C0C9 1292 aaKnown RBP8.8□□□□□ -1
VPS13A-201ENST00000355766 GGA3Q9NZ52 723 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 DMGDHQ9UI17 866 aaKnown RBP8.8□□□□□ -1
VPS13A-201ENST00000355766 PAPPA2Q9BXP8 1791 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 DLG5Q8TDM6 1919 aa8.8□□□□□ -1
VPS13A-201ENST00000355766 FAM196BA6NMK8 535 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms