RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 FOXP1Q9H334 677 aaPredicted RBP17.24■□□□□ 0.35
TPM3-208ENST00000341485 PSDA5PKW4 1024 aaPredicted RBP17.23■□□□□ 0.35
TPM3-208ENST00000341485 SCNN1DP51172 638 aa17.23■□□□□ 0.35
TPM3-208ENST00000341485 FKBP1AP62942 108 aaKnown RBP17.23■□□□□ 0.35
TPM3-208ENST00000341485 PDE4BQ07343 736 aa17.23■□□□□ 0.35
TPM3-208ENST00000341485 ISM2Q6H9L7 571 aa17.23■□□□□ 0.35
TPM3-208ENST00000341485 ENAHQ8N8S7 591 aaPredicted RBP17.23■□□□□ 0.35
TPM3-208ENST00000341485 KRI1Q8N9T8 703 aaKnown RBP17.23■□□□□ 0.35
TPM3-208ENST00000341485 PSMD1Q99460 953 aa17.23■□□□□ 0.35
TPM3-208ENST00000341485 NEMFO60524 1076 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 PRDM1O75626 825 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 NR5A1Q13285 461 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 PNOCQ13519 176 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 FILIP1Q7Z7B0 1213 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 TSC1Q92574 1164 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 ZSCAN10Q96SZ4 725 aaPredicted RBP17.22■□□□□ 0.35
TPM3-208ENST00000341485 PDCL3Q9H2J4 239 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 MKRN1Q9UHC7 482 aaKnown RBP17.22■□□□□ 0.35
TPM3-208ENST00000341485 LONRF3Q496Y0 759 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 C12orf60Q5U649 245 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 KRBA2Q6ZNG9 492 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 METTL16Q86W50 562 aaKnown RBP17.22■□□□□ 0.35
TPM3-208ENST00000341485 OXER1Q8TDS5 423 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 TEKT1Q969V4 418 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 SHISA4Q96DD7 197 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 SAP30BPQ9UHR5 308 aaKnown RBP17.22■□□□□ 0.35
TPM3-208ENST00000341485 KCNH3Q9ULD8 1083 aa17.22■□□□□ 0.35
TPM3-208ENST00000341485 SMTNL1A8MU46 457 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 FGRP09769 529 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 RHBDL3P58872 404 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 EVX2Q03828 476 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 GRIN1Q05586 938 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
TPM3-208ENST00000341485 DACT2Q5SW24 774 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 KIAA0825Q8IV33 1275 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 RNF26Q9BY78 433 aaPredicted RBP17.21■□□□□ 0.35
TPM3-208ENST00000341485 FBXO2Q9UK22 296 aaPredicted RBP17.21■□□□□ 0.35
TPM3-208ENST00000341485 CDK5RAP2Q96SN8 1893 aa17.21■□□□□ 0.35
TPM3-208ENST00000341485 RIOK3O14730 519 aaKnown RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 CCZ1BP86790 482 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 CCZ1P86791 482 aaPredicted RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 FUT2Q10981 343 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 RILPL1Q5EBL4 403 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 SPECC1Q5M775 1068 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 HHIPL2Q6UWX4 724 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 IQCA1Q86XH1 822 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 LARGE2Q8N3Y3 721 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 C16orf45Q96MC5 204 aaPredicted RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 XPO4Q9C0E2 1151 aaKnown RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 IFNKQ9P0W0 207 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.2■□□□□ 0.34
TPM3-208ENST00000341485 SCN9AQ15858 1988 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 FLT1P17948 1338 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 IKBKBO14920 756 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 ORC4O43929 436 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 SMC2O95347 1197 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 PTPREP23469 700 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 PPP2R5BQ15173 497 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 PKN1Q16512 942 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 OSBPL5Q9H0X9 879 aaPredicted RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 HSD3B7Q9H2F3 369 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 ZNF277Q9NRM2 450 aaPredicted RBP17.2■□□□□ 0.34
TPM3-208ENST00000341485 PCDHB6Q9Y5E3 794 aa17.2■□□□□ 0.34
TPM3-208ENST00000341485 SKILP12757 684 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 CRKP46108 304 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 TPM4P67936 248 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 IFIT1BQ5T764 474 aaKnown RBP17.19■□□□□ 0.34
TPM3-208ENST00000341485 FOXP4Q8IVH2 680 aaPredicted RBP17.19■□□□□ 0.34
TPM3-208ENST00000341485 CNNM3Q8NE01 707 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 USP40Q9NVE5 1235 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 RBM5P52756 815 aaKnown RBP eCLIP17.19■□□□□ 0.34
TPM3-208ENST00000341485 PICALMQ13492 652 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 MKNK2Q9HBH9 465 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 IMPACTQ9P2X3 320 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 CD2APQ9Y5K6 639 aa17.19■□□□□ 0.34
TPM3-208ENST00000341485 TSPY2A6NKD2 308 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 YDJCA8MPS7 323 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 FOXN1O15353 648 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 PLEKHA8P1O95397 391 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 TNNT1P13805 278 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 GSDMDP57764 484 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 MDM2Q00987 491 aaPredicted RBP17.18■□□□□ 0.34
TPM3-208ENST00000341485 TPD52L1Q16890 204 aaPredicted RBP17.18■□□□□ 0.34
TPM3-208ENST00000341485 CATIPQ7Z7H3 387 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 DYNLL2Q96FJ2 89 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 MAP7D2Q96T17 732 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 VPS33BQ9H267 617 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 VPS54Q9P1Q0 977 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 ROBO3Q96MS0 1386 aa17.18■□□□□ 0.34
TPM3-208ENST00000341485 USP27XA6NNY8 438 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 PRPF3O43395 683 aaKnown RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 LMOD1P29536 600 aaPredicted RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 AKAP17AQ02040 695 aaKnown RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 FAM47AQ5JRC9 791 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 ELOA2Q8IYF1 753 aaPredicted RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 SGIP1Q9BQI5 828 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 CABP5Q9NP86 173 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 PCDHA5Q9Y5H7 936 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 ADAMTSL1Q8N6G6 1762 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 MYH1P12882 1939 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms