RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CYP4A22Q5TCH4 519 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 IER5Q5VY09 327 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 PGBD4Q96DM1 585 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 DYRK4Q9NR20 520 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 SORBS3O60504 671 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 STXBP2Q15833 593 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 SLC44A5Q8NCS7 719 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 CD99L2Q8TCZ2 262 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ARHGAP9Q9BRR9 750 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 TTC12Q9H892 705 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ATG3Q9NT62 314 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ROBO2Q9HCK4 1378 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 TLL1O43897 1013 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 GABPAQ06546 454 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 SNRNP48Q6IEG0 339 aaKnown RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 DAAM2Q86T65 1068 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 MICU3Q86XE3 530 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ZBED9Q6R2W3 1325 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 EFCAB14O75071 495 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ZNF18P17022 549 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 PTMSP20962 102 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 LMBRD2Q68DH5 695 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 MED14O60244 1454 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ZNF536O15090 1300 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 PLA2R1Q13018 1463 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 H0YCG3 227 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 KRT19P08727 400 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 BTG3Q14201 252 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 CWF19L2Q2TBE0 894 aaKnown RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 FBXW10Q5XX13 1052 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 PPP2R2DQ66LE6 453 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 RYBPQ8N488 228 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 SLC7A3Q8WY07 619 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 ABCA5Q8WWZ7 1642 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 STK3Q13188 491 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 KANK3Q6NY19 840 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 THEM5Q8N1Q8 247 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 ATP6V0A1Q93050 837 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 KPNA6O60684 536 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 VIMP08670 466 aaKnown RBP9.48□□□□□ -0.89
HMGB1-203ENST00000341423 KPNA1P52294 538 aaPredicted RBP9.48□□□□□ -0.89
HMGB1-203ENST00000341423 CYP4A11Q02928 519 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 COG2Q14746 738 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 AKNAD1Q5T1N1 836 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 KCNV1Q6PIU1 500 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 STIM2Q9P246 746 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 ARHGEF12Q9NZN5 1544 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 INSRP06213 1382 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 DDX11L8A8MPP1 907 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 CABYRO75952 493 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 PLCB4Q15147 1175 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 SPATA5Q8NB90 893 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 DPF2Q92785 391 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 DEF6Q9H4E7 631 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 DBR1Q9UK59 544 aaKnown RBP9.48□□□□□ -0.89
HMGB1-203ENST00000341423 USP16Q9Y5T5 823 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 BMP3P12645 472 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 MIS18BP1Q6P0N0 1132 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 MIER3Q7Z3K6 550 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 DACH1Q9UI36 760 aa9.48□□□□□ -0.89
HMGB1-203ENST00000341423 HEMK1Q9Y5R4 338 aaPredicted RBP9.48□□□□□ -0.89
HMGB1-203ENST00000341423 ESYT2A0FGR8 921 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 SYCE3A1L190 88 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 PDHXO00330 501 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 POLGP54098 1239 aaPredicted RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 TBC1D8BQ0IIM8 1120 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 IKBKEQ14164 716 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 RGL4Q8IZJ4 473 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 ATRIPQ8WXE1 791 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 ACAD9Q9H845 621 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 GPR25O00155 361 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 PRRG1O14668 218 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 CDC45O75419 566 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 FGBP02675 491 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 LRG1P02750 347 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 STAT2P52630 851 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 HERC4Q5GLZ8 1057 aaPredicted RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 GLB1LQ6UWU2 654 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 FBXO22Q8NEZ5 403 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 SLF1Q9BQI6 1058 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 XPNPEP3Q9NQH7 507 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 HERC5Q9UII4 1024 aaKnown RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 UNC13AQ9UPW8 1703 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 INO80B-WBP1J3KQ70 363 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 EGFRP00533 1210 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 ARL1P40616 181 aaPredicted RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 MCMDC2Q4G0Z9 681 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 POP1Q99575 1024 aaKnown RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 ATP6V0A4Q9HBG4 840 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 RTN4Q9NQC3 1192 aaKnown RBP9.47□□□□□ -0.89
HMGB1-203ENST00000341423 SLC12A6Q9UHW9 1150 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 MAP3K4Q9Y6R4 1608 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 NEFHP12036 1026 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 NEDD9Q14511 834 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 RTN1Q16799 776 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 DSTYKQ6XUX3 929 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 LZTS2Q9BRK4 669 aa9.47□□□□□ -0.89
HMGB1-203ENST00000341423 FRMD3A2A2Y4 597 aa9.46□□□□□ -0.89
HMGB1-203ENST00000341423 SPDYE16A6NNV3 312 aaPredicted RBP9.46□□□□□ -0.89
HMGB1-203ENST00000341423 ATXN8OSP0DMR3 200 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms