RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ZNF711Q9Y462 761 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 KRT14P02533 472 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 CARD10Q9BWT7 1032 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 TSKSQ9UJT2 592 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 CCDC184Q52MB2 194 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 MAP7D3Q8IWC1 876 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 PARD3BQ8TEW8 1205 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 BCL2L12Q9HB09 334 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 ZSCAN32Q9NX65 697 aa14.1□□□□□ -0.15
USP47-202ENST00000339865 ATF7P17544 494 aaPredicted RBP14.1□□□□□ -0.15
USP47-202ENST00000339865 RRAGDQ9NQL2 400 aaPredicted RBP14.1□□□□□ -0.15
USP47-202ENST00000339865 TDRD9Q8NDG6 1382 aaKnown RBP14.1□□□□□ -0.15
USP47-202ENST00000339865 ARHGAP6O43182 974 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 KAZNQ674X7 775 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 SYNDIG1Q9H7V2 258 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 TFCP2L1Q9NZI6 479 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 POC1B-GALNT4F8VUJ3 575 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 DDIT3P35638 169 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 ART3Q13508 389 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 BRAPQ7Z569 592 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP47-202ENST00000339865 TRIML2Q8N7C3 387 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 ENAHQ8N8S7 591 aaPredicted RBP14.09□□□□□ -0.15
USP47-202ENST00000339865 TXLNGQ9NUQ3 528 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 SKIP12755 728 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 MAGEA1P43355 309 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 ATG3Q9NT62 314 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 TBC1D12O60347 775 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 GCNT3O95395 438 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 KDM1AO60341 852 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 KRT19P08727 400 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 PGBD1Q96JS3 809 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 DACH2Q96NX9 599 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 CYTH2Q99418 400 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 GPC4O75487 556 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 KLHL30Q0D2K2 578 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 KLHL29Q96CT2 875 aa14.09□□□□□ -0.15
USP47-202ENST00000339865 RRP15Q9Y3B9 282 aaKnown RBP14.09□□□□□ -0.15
USP47-202ENST00000339865 FAM133BQ5BKY9 247 aaKnown RBP14.08□□□□□ -0.15
USP47-202ENST00000339865 TMTC1Q8IUR5 882 aa14.08□□□□□ -0.15
USP47-202ENST00000339865 TYW1Q9NV66 732 aaKnown RBP14.08□□□□□ -0.15
USP47-202ENST00000339865 PTPN22Q9Y2R2 807 aa14.08□□□□□ -0.15
USP47-202ENST00000339865 ABCB4P21439 1286 aa14.08□□□□□ -0.15
USP47-202ENST00000339865 OCA2Q04671 838 aa14.08□□□□□ -0.15
USP47-202ENST00000339865 ST13P4Q8IZP2 240 aaPredicted RBP14.08□□□□□ -0.15
USP47-202ENST00000339865 CCDC197Q8NCU1 140 aa14.08□□□□□ -0.15
USP47-202ENST00000339865 DDX28Q9NUL7 540 aaKnown RBP14.08□□□□□ -0.15
USP47-202ENST00000339865 DBF4Q9UBU7 674 aaPredicted RBP14.08□□□□□ -0.15
USP47-202ENST00000339865 PAK1Q13153 545 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 ZC3H12BQ5HYM0 836 aaKnown RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 C2CD5Q86YS7 1000 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 ZC3H18Q86VM9 953 aaKnown RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 USHBP1Q8N6Y0 703 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 MCUQ8NE86 351 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 RAB3GAP1Q15042 981 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 EFCAB13Q8IY85 973 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 TRPC5Q9UL62 973 aaPredicted RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 FIS1Q9Y3D6 152 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 MYLK4Q86YV6 388 aaPredicted RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 ZGPATQ8N5A5 531 aaKnown RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 FLCNQ8NFG4 579 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 ESYT1Q9BSJ8 1104 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 INTS9Q9NV88 658 aaKnown RBP14.08□□□□□ -0.16
USP47-202ENST00000339865 PDE6AP16499 860 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 CCDC157Q569K6 752 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 ST7Q9NRC1 585 aa14.08□□□□□ -0.16
USP47-202ENST00000339865 RTL9Q8NET4 1388 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 NPHP3Q7Z494 1330 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 AK2P54819 239 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 MAIP1Q8WWC4 291 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 DYDC2Q96IM9 177 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 OATP04181 439 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 RBM46Q8TBY0 533 aaKnown RBP14.07□□□□□ -0.16
USP47-202ENST00000339865 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.07□□□□□ -0.16
USP47-202ENST00000339865 ERBINQ96RT1 1412 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 NSD3Q9BZ95 1437 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 PLEKHH2Q8IVE3 1493 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 PPP1R2P41236 205 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 RAPGEF5Q92565 580 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 TSC1Q92574 1164 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 KAT6AQ92794 2004 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 RTEL1-TNFRSF6BF6WH68 1400 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 GRAMD1BQ3KR37 738 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 SFMBT2Q5VUG0 894 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 MRPL44Q9H9J2 332 aaKnown RBP14.07□□□□□ -0.16
USP47-202ENST00000339865 NBNO60934 754 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 OCM2P0CE71 109 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 OCMP0CE72 109 aaPredicted RBP14.07□□□□□ -0.16
USP47-202ENST00000339865 CD19P15391 556 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 IQCB1Q15051 598 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 SCYL2Q6P3W7 929 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 STRIP2Q9ULQ0 834 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 MYSM1Q5VVJ2 828 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 FAM180AQ6UWF9 173 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 ARMC9Q7Z3E5 817 aa14.07□□□□□ -0.16
USP47-202ENST00000339865 INHBAP08476 426 aa14.06□□□□□ -0.16
USP47-202ENST00000339865 ADKP55263 362 aaKnown RBP14.06□□□□□ -0.16
USP47-202ENST00000339865 TCIRG1Q13488 830 aa14.06□□□□□ -0.16
USP47-202ENST00000339865 RRAGAQ7L523 313 aa14.06□□□□□ -0.16
USP47-202ENST00000339865 DDX42Q86XP3 938 aaKnown RBP eCLIP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms