RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PUS7LQ9H0K6 701 aaKnown RBP11.46□□□□□ -0.57
USP54-201ENST00000339859 NCOA5Q9HCD5 579 aaKnown RBP11.46□□□□□ -0.57
USP54-201ENST00000339859 SLIT3O75094 1523 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 ANKRD62A6NC57 917 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 VWA3AA6NCI4 1184 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 PSMD14O00487 310 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 TXKP42681 527 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 FAM47CQ5HY64 1035 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 PRKAG2Q9UGJ0 569 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 CHD2O14647 1828 aaKnown RBP11.46□□□□□ -0.58
USP54-201ENST00000339859 C9orf131Q5VYM1 1079 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 TEKT3Q9BXF9 490 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 RIPOR2Q9Y4F9 1068 aa11.46□□□□□ -0.58
USP54-201ENST00000339859 KDM3AQ9Y4C1 1321 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 NALCNQ8IZF0 1738 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 CAVIN2O95810 425 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 COPB2P35606 906 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 SCARF1Q14162 830 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 SPC24Q8NBT2 197 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 COA7Q96BR5 231 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 HERC5Q9UII4 1024 aaKnown RBP11.45□□□□□ -0.58
USP54-201ENST00000339859 FEM1BQ9UK73 627 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 PRKAB2O43741 272 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 GOLGA8HP0CJ92 632 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 SCG2P13521 617 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 PHKBQ93100 1093 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 FAM212AQ96EL1 285 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 VPS33BQ9H267 617 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 SYCE3A1L190 88 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 PRDX5P30044 214 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 BLIDQ8IZY5 108 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 TRIM6Q9C030 488 aaPredicted RBP11.45□□□□□ -0.58
USP54-201ENST00000339859 PUF60Q9UHX1 559 aaKnown RBP11.45□□□□□ -0.58
USP54-201ENST00000339859 TRPC6Q9Y210 931 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 GMPSP49915 693 aaPredicted RBP11.45□□□□□ -0.58
USP54-201ENST00000339859 SLC10A5Q5PT55 438 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 DNM3Q9UQ16 869 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 ZHX2Q9Y6X8 837 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 CCDC169A6NNP5 214 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 KCTD1Q719H9 257 aa11.45□□□□□ -0.58
USP54-201ENST00000339859 YEATS4O95619 227 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 CTAGE1Q96RT6 745 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 MMRN2Q9H8L6 949 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 PCDHA1Q9Y5I3 950 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 RPL13P26373 211 aaKnown RBP11.44□□□□□ -0.58
USP54-201ENST00000339859 TTC14Q96N46 770 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 CCDC181Q5TID7 509 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 DYNLL2Q96FJ2 89 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 SLF1Q9BQI6 1058 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 VPS54Q9P1Q0 977 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 FBXO40Q9UH90 709 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 BIN1O00499 593 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 CYP2E1P05181 493 aaPredicted RBP11.44□□□□□ -0.58
USP54-201ENST00000339859 USP8P40818 1118 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 PDIA6Q15084 440 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 KRT40Q6A162 431 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 TAF4BQ92750 862 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 MAP4K1Q92918 833 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 OSBP2Q969R2 916 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 NUP88Q99567 741 aaPredicted RBP11.44□□□□□ -0.58
USP54-201ENST00000339859 LRWD1Q9UFC0 647 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 CAMTA1Q9Y6Y1 1673 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 UTYO14607 1347 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 GH2P01242 217 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 TNNT3P45378 269 aaPredicted RBP11.44□□□□□ -0.58
USP54-201ENST00000339859 CACNB3P54284 484 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 HHIPL2Q6UWX4 724 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 MAP7D2Q96T17 732 aa11.44□□□□□ -0.58
USP54-201ENST00000339859 LSG1Q9H089 658 aaKnown RBP11.44□□□□□ -0.58
USP54-201ENST00000339859 COL3A1P02461 1466 aaPredicted RBP11.43□□□□□ -0.58
USP54-201ENST00000339859 NT5C3AQ9H0P0 336 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 MYOZ2Q9NPC6 264 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 MON2Q7Z3U7 1717 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 ELP1O95163 1332 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 USP17L10C9JJH3 530 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 NEMFO60524 1076 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 SPAG1Q07617 926 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 RSPH3Q86UC2 560 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 SNX29Q8TEQ0 813 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 CDHR1Q96JP9 859 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 GDPD2Q9HCC8 539 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 NRBP2Q9NSY0 501 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 CALUO43852 315 aaPredicted RBP11.43□□□□□ -0.58
USP54-201ENST00000339859 PFKFB2O60825 505 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 DNM1Q05193 864 aaKnown RBP11.43□□□□□ -0.58
USP54-201ENST00000339859 ANO1Q5XXA6 986 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 GTF3C6Q969F1 213 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 ZSWIM6Q9HCJ5 1215 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 FRMD4BQ9Y2L6 1034 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 POLRMTO00411 1230 aaKnown RBP11.43□□□□□ -0.58
USP54-201ENST00000339859 POTEAQ6S8J7 498 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
USP54-201ENST00000339859 SREBF2Q12772 1141 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 PLA2G4DQ86XP0 818 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 ERLIN2O94905 339 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 TAF12Q16514 161 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 GTF3C2Q8WUA4 911 aaPredicted RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 ADARB2Q9NS39 739 aaKnown RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 STRBPQ96SI9 672 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms