RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 LAMB2P55268 1798 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ZBED4O75132 1171 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 DNM2P50570 870 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MRPS25P82663 173 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RBBP5Q15291 538 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 UTP14CQ5TAP6 766 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TBC1D22AQ8WUA7 517 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RUBCNQ92622 972 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TCP11L1Q9NUJ3 509 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 UTP6Q9NYH9 597 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TPX2Q9ULW0 747 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TYW5A2RUC4 315 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 HNRNPRO43390 633 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TRAK2O60296 914 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 HNRNPCL1O60812 293 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RILPL1Q5EBL4 403 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SULT6B1Q6IMI4 303 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ZNF354CQ86Y25 554 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SRRM1Q8IYB3 904 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 NUP62CLQ9H1M0 184 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 IMPACTQ9P2X3 320 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 FBXL21Q9UKT6 434 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ARHGEF37A1IGU5 675 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 GPTP24298 496 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 LAMC2Q13753 1193 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PDCD2Q16342 344 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 KLHL40Q2TBA0 621 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 FASTKD5Q7L8L6 764 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CABLES1Q8TDN4 633 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MTRQ99707 1265 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MED4Q9NPJ6 270 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PTPRCP08575 1304 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ZNF335Q9H4Z2 1342 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 WHAMMP3Q1A5X7 153 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ANKRD45Q5TZF3 282 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CNGA4Q8IV77 575 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 GOLGA5Q8TBA6 731 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RMDN2Q96LZ7 410 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 JPH2Q9BR39 696 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 LMCD1Q9NZU5 365 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SOS2Q07890 1332 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PPFIA4O75335 1185 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 CLCN1P35523 988 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 ANKRD27Q96NW4 1050 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 PUF60Q9UHX1 559 aaKnown RBP3.65□□□□□ -1.82
CSMD3-202ENST00000339701 ERBB3P21860 1342 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 QSER1Q2KHR3 1735 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 ZW10O43264 779 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 PHBP35232 272 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 NME9Q86XW9 330 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 TNMDQ9H2S6 317 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 GNAI2P04899 355 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 HOXB6P17509 224 aaKnown RBP3.65□□□□□ -1.82
CSMD3-202ENST00000339701 DPYDQ12882 1025 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 DEFB115Q30KQ5 88 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 SYCP2LQ5T4T6 812 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 C9orf131Q5VYM1 1079 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 ZNF365Q70YC5 407 aa3.65□□□□□ -1.82
CSMD3-202ENST00000339701 RRP36Q96EU6 259 aaKnown RBP3.65□□□□□ -1.82
CSMD3-202ENST00000339701 COL14A1Q05707 1796 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CEP104O60308 925 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 RRAGCQ9HB90 399 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 MYO1AQ9UBC5 1043 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 SHPRHQ149N8 1683 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 USP19O94966 1318 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 IGFBP4P22692 258 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 RPL13P26373 211 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 PKN2Q16513 984 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 RNF34Q969K3 372 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 PAWRQ96IZ0 340 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 TESK2Q96S53 571 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 NUP58Q9BVL2 599 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 IRF2BPLQ9H1B7 796 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CNNM2Q9H8M5 875 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CACYBPQ9HB71 228 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 COMMD10Q9Y6G5 202 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 GSTTP1A0A1W2PQM5 241 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 SLC26A4O43511 780 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 TBC1D8O95759 1140 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 UBE2HP62256 183 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 TNNC1P63316 161 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 ARHGAP4P98171 946 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 TAF11Q15544 211 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC122Q5T0U0 273 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CCHCR1Q8TD31 782 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 IMPG2Q9BZV3 1241 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 AAASQ9NRG9 546 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 OLFML3Q9NRN5 406 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 GIMAP4Q9NUV9 329 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 MYH15Q9Y2K3 1946 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC78A2IDD5 438 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 K7ELQ4 463 aaPredicted RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 MAP3K10Q02779 954 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 SF3A3Q12874 501 aaKnown RBP eCLIP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 SUGP1Q8IWZ8 645 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 MOV10L1Q9BXT6 1211 aaKnown RBP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 IFT122Q9HBG6 1241 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 ZC4H2Q9NQZ6 224 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms