RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 LIFRP42702 1097 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 NEK4P51957 841 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 FGD1P98174 961 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 SNAPC2Q13487 334 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 DGKZQ13574 1117 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 Q6ZUG5 572 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 FBXL16Q8N461 479 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 MS4A4AQ96JQ5 239 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 PDRG1Q9NUG6 133 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 SYNPO2Q9UMS6 1093 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 ATAD5Q96QE3 1844 aa26.02■■□□□ 1.76
SDC3-202ENST00000339394 A0A0G2JLL6 359 aaPredicted RBP26.01■■□□□ 1.75
SDC3-202ENST00000339394 HMGCS2P54868 508 aa26.01■■□□□ 1.75
SDC3-202ENST00000339394 PRRT2Q7Z6L0 340 aaPredicted RBP26.01■■□□□ 1.75
SDC3-202ENST00000339394 TMTC2Q8N394 836 aa26.01■■□□□ 1.75
SDC3-202ENST00000339394 KAT14Q9H8E8 782 aa26.01■■□□□ 1.75
SDC3-202ENST00000339394 EMILIN3Q9NT22 766 aa26.01■■□□□ 1.75
SDC3-202ENST00000339394 F5H6K3 240 aa26■■□□□ 1.75
SDC3-202ENST00000339394 GTF2A2P52657 109 aa26■■□□□ 1.75
SDC3-202ENST00000339394 USP14P54578 494 aa26■■□□□ 1.75
SDC3-202ENST00000339394 KLRC3Q07444 240 aa26■■□□□ 1.75
SDC3-202ENST00000339394 SH3D19Q5HYK7 790 aa26■■□□□ 1.75
SDC3-202ENST00000339394 CAPNS2Q96L46 248 aa26■■□□□ 1.75
SDC3-202ENST00000339394 VCPKMTQ9H867 229 aa26■■□□□ 1.75
SDC3-202ENST00000339394 KIAA1755Q5JYT7 1200 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 USP17L2Q6R6M4 530 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 PNMA1Q8ND90 353 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 AGXT2Q9BYV1 514 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 GOPCQ9HD26 462 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 RAD21O60216 631 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 RABEP1Q15276 862 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 SGMS1Q86VZ5 419 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 SPICE1Q8N0Z3 855 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 GMCL1P1Q8NEA9 526 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 BRF1Q92994 677 aa25.99■■□□□ 1.75
SDC3-202ENST00000339394 TOB2Q14106 344 aaPredicted RBP25.98■■□□□ 1.75
SDC3-202ENST00000339394 NFXL1Q6ZNB6 911 aa25.98■■□□□ 1.75
SDC3-202ENST00000339394 C12orf42Q96LP6 360 aa25.98■■□□□ 1.75
SDC3-202ENST00000339394 CEP350Q5VT06 3117 aa25.98■■□□□ 1.75
SDC3-202ENST00000339394 PCNTO95613 3336 aa25.98■■□□□ 1.75
SDC3-202ENST00000339394 NDUFB10O96000 172 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 CETPP11597 493 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 NOGQ13253 232 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 MOGSQ13724 837 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 LPAR1Q92633 364 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 ZIC5Q96T25 663 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 ALDH8A1Q9H2A2 487 aaPredicted RBP25.97■■□□□ 1.75
SDC3-202ENST00000339394 TMOD4Q9NZQ9 345 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 MTMR7Q9Y216 660 aa25.97■■□□□ 1.75
SDC3-202ENST00000339394 PHIPQ8WWQ0 1821 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 WDR33Q9C0J8 1336 aaKnown RBP25.96■■□□□ 1.75
SDC3-202ENST00000339394 CCL15-CCL14A0A0B4J2E2 113 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 CCDC69A6NI79 296 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 VEGFBP49765 207 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 CCL15Q16663 113 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 SLFN13Q68D06 897 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 FASTKD5Q7L8L6 764 aaKnown RBP25.96■■□□□ 1.75
SDC3-202ENST00000339394 CHMP4CQ96CF2 233 aa25.96■■□□□ 1.75
SDC3-202ENST00000339394 MANSC4A6NHS7 340 aaPredicted RBP25.95■■□□□ 1.75
SDC3-202ENST00000339394 AOC2O75106 756 aa25.95■■□□□ 1.75
SDC3-202ENST00000339394 GADL1Q6ZQY3 521 aa25.95■■□□□ 1.75
SDC3-202ENST00000339394 CATIPQ7Z7H3 387 aa25.95■■□□□ 1.75
SDC3-202ENST00000339394 PROCA1Q8NCQ7 364 aaPredicted RBP25.95■■□□□ 1.75
SDC3-202ENST00000339394 BRI3BPQ8WY22 251 aa25.95■■□□□ 1.75
SDC3-202ENST00000339394 BRPF3Q9ULD4 1205 aa25.95■■□□□ 1.75
SDC3-202ENST00000339394 TESPA1A2RU30 521 aaPredicted RBP25.95■■□□□ 1.74
SDC3-202ENST00000339394 VCAM1P19320 739 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 AK2P54819 239 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 APOBRQ0VD83 1088 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 TROAPQ12815 778 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 RASGRP2Q7LDG7 609 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 SLC12A7Q9Y666 1083 aa25.95■■□□□ 1.74
SDC3-202ENST00000339394 PDHBP11177 359 aa25.94■■□□□ 1.74
SDC3-202ENST00000339394 KIF23Q02241 960 aaPredicted RBP25.94■■□□□ 1.74
SDC3-202ENST00000339394 TREML2Q5T2D2 321 aa25.94■■□□□ 1.74
SDC3-202ENST00000339394 ZNF654Q8IZM8 581 aa25.94■■□□□ 1.74
SDC3-202ENST00000339394 GMCL1Q96IK5 515 aa25.94■■□□□ 1.74
SDC3-202ENST00000339394 LARP6Q9BRS8 491 aaKnown RBP25.94■■□□□ 1.74
SDC3-202ENST00000339394 KLF18A0A0U1RQI7 1052 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 SNHG28P0DPA3 235 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 SLC1A4P43007 532 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 INHBEP58166 350 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 NUP88Q99567 741 aaPredicted RBP25.93■■□□□ 1.74
SDC3-202ENST00000339394 PTPN18Q99952 460 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 MYL10Q9BUA6 226 aa25.93■■□□□ 1.74
SDC3-202ENST00000339394 EVCP57679 992 aa25.92■■□□□ 1.74
SDC3-202ENST00000339394 ANKRD1Q15327 319 aa25.92■■□□□ 1.74
SDC3-202ENST00000339394 GPAT2Q6NUI2 795 aa25.92■■□□□ 1.74
SDC3-202ENST00000339394 APOA5Q6Q788 366 aa25.92■■□□□ 1.74
SDC3-202ENST00000339394 AGTPBP1Q9UPW5 1226 aa25.92■■□□□ 1.74
SDC3-202ENST00000339394 WDR46O15213 610 aaKnown RBP25.91■■□□□ 1.74
SDC3-202ENST00000339394 FAM83BQ5T0W9 1011 aa25.91■■□□□ 1.74
SDC3-202ENST00000339394 SYNE3Q6ZMZ3 975 aa25.91■■□□□ 1.74
SDC3-202ENST00000339394 NUP133Q8WUM0 1156 aa25.91■■□□□ 1.74
SDC3-202ENST00000339394 DCAF4Q8WV16 495 aa25.91■■□□□ 1.74
SDC3-202ENST00000339394 RPAP3Q9H6T3 665 aaPredicted RBP25.91■■□□□ 1.74
SDC3-202ENST00000339394 BTBD19C9JJ37 291 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 DDAH1O94760 285 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 BMP3P12645 472 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 SREBF2Q12772 1141 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms