RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 IL25Q9H293 177 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 VCPKMTQ9H867 229 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 ZNF287Q9HBT7 754 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 SRRDQ9UH36 339 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.83■□□□□ 0.61
CLN3-201ENST00000333496 COL11A1P12107 1806 aaPredicted RBP18.83■□□□□ 0.6
CLN3-201ENST00000333496 HIP1O00291 1037 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 FCGRTP55899 365 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 CENPQQ7L2Z9 268 aaPredicted RBP18.82■□□□□ 0.6
CLN3-201ENST00000333496 ZMYM6O95789 1325 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 SLC3A2P08195 630 aaKnown RBP18.82■□□□□ 0.6
CLN3-201ENST00000333496 ATP2B2Q01814 1243 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 Q3C1V9 767 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 FAM47AQ5JRC9 791 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 SKAP1Q86WV1 359 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 SPICE1Q8N0Z3 855 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 GABRQQ9UN88 632 aa18.82■□□□□ 0.6
CLN3-201ENST00000333496 A0A0G2JMZ2 1700 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 FGRP09769 529 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 MFAP1P55081 439 aaKnown RBP18.81■□□□□ 0.6
CLN3-201ENST00000333496 PRMT2P55345 433 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 ERICH6BQ5W0A0 696 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 NEDD1Q8NHV4 660 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 LPAR1Q92633 364 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 PLIN4Q96Q06 1357 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 SH2D4AQ9H788 454 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 NYAP2Q9P242 653 aa18.81■□□□□ 0.6
CLN3-201ENST00000333496 MYPNQ86TC9 1320 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 SPDYE16A6NNV3 312 aaPredicted RBP18.8■□□□□ 0.6
CLN3-201ENST00000333496 CNMDO75829 334 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 HOXD10P28358 340 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 PRKCZQ05513 592 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 LBX2Q6XYB7 198 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 CEP95Q96GE4 821 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 NBPF3Q9H094 633 aa18.8■□□□□ 0.6
CLN3-201ENST00000333496 MKI67P46013 3256 aaKnown RBP18.8■□□□□ 0.6
CLN3-201ENST00000333496 TNPO2O14787 897 aaKnown RBP18.79■□□□□ 0.6
CLN3-201ENST00000333496 TSPY3P0CV98 308 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 TSPY8P0CW00 308 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 ERVK-9P63128 1117 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 ERVK-24P63145 666 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 TFAP4Q01664 338 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 ARMC5Q96C12 935 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 PAGR1Q9BTK6 254 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 MTMR4Q9NYA4 1195 aa18.79■□□□□ 0.6
CLN3-201ENST00000333496 RBBP6Q7Z6E9 1792 aaKnown RBP18.79■□□□□ 0.6
CLN3-201ENST00000333496 CHMLP26374 656 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 HAND2P61296 217 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 GPRC5AQ8NFJ5 357 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 GTF3C2Q8WUA4 911 aaPredicted RBP18.78■□□□□ 0.6
CLN3-201ENST00000333496 TANGO6Q9C0B7 1094 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 CLIP2Q9UDT6 1046 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 WDR46O15213 610 aaKnown RBP18.78■□□□□ 0.6
CLN3-201ENST00000333496 ORC4O43929 436 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 SOX10P56693 466 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 COG2Q14746 738 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 SLC9C1Q4G0N8 1177 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 MKL1Q969V6 931 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 PORCNQ9H237 461 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 BTBD7Q9P203 1132 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 RABGAP1Q9Y3P9 1069 aa18.78■□□□□ 0.6
CLN3-201ENST00000333496 FLT3LGP49771 235 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 NKX2-3Q8TAU0 364 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 SH3TC2Q8TF17 1288 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 DSCC1Q9BVC3 393 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 GOPCQ9HD26 462 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 IL17RBQ9NRM6 502 aa18.77■□□□□ 0.6
CLN3-201ENST00000333496 KIAA0100Q14667 2235 aaKnown RBP18.77■□□□□ 0.59
CLN3-201ENST00000333496 TSPY2A6NKD2 308 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 F5H6K3 240 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 NMT2O60551 498 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 TTLL1O95922 423 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 DSG3P32926 999 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 KLRC3Q07444 240 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 TBC1D10CQ8IV04 446 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 RAET1EQ8TD07 263 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 COA7Q96BR5 231 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 ZNF333Q96JL9 665 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 HOXC10Q9NYD6 342 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 GJD2Q9UKL4 321 aa18.76■□□□□ 0.59
CLN3-201ENST00000333496 ZNFX1Q9P2E3 1918 aaKnown RBP18.76■□□□□ 0.59
CLN3-201ENST00000333496 RANBP6O60518 1105 aaKnown RBP18.75■□□□□ 0.59
CLN3-201ENST00000333496 FLOT1O75955 427 aa18.75■□□□□ 0.59
CLN3-201ENST00000333496 FAM83BQ5T0W9 1011 aa18.75■□□□□ 0.59
CLN3-201ENST00000333496 CCDC136Q96JN2 1154 aa18.75■□□□□ 0.59
CLN3-201ENST00000333496 FBXO28Q9NVF7 368 aa18.75■□□□□ 0.59
CLN3-201ENST00000333496 RAD50Q92878 1312 aa18.75■□□□□ 0.59
CLN3-201ENST00000333496 RAD21O60216 631 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 NDUFB10O96000 172 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 GRK4P32298 578 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 RGS19P49795 217 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 AKNAD1Q5T1N1 836 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 NBPF11Q86T75 865 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 LRRC47Q8N1G4 583 aaKnown RBP18.74■□□□□ 0.59
CLN3-201ENST00000333496 STAG1Q8WVM7 1258 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 NUP88Q99567 741 aaPredicted RBP18.74■□□□□ 0.59
CLN3-201ENST00000333496 ZNF213O14771 459 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 NOVP48745 357 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 IRF5Q13568 498 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 RRP12Q5JTH9 1297 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms