RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZNF296Q8WUU4 475 aaPredicted RBP18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 KRT23Q9C075 422 aa18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 RPAP3Q9H6T3 665 aaPredicted RBP18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 CPA4Q9UI42 421 aa18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 STX8Q9UNK0 236 aa18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 GTF3C3Q9Y5Q9 886 aa18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 TAF6LQ9Y6J9 622 aa18.77■□□□□ 0.59
CCDC28A-201ENST00000332797 HOXA7P31268 230 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 PPP4R3BQ5MIZ7 849 aa18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 LRRC47Q8N1G4 583 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 LPAR1Q92633 364 aa18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 PRDM10Q9NQV6 1147 aa18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 ADGRA2Q96PE1 1338 aa18.76■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L15C9J2P7 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L13C9JLJ4 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L11C9JVI0 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L18D6R9N7 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L22D6RA61 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L17D6RBQ6 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L19D6RCP7 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L20D6RJB6 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 SLC27A2O14975 620 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 FKTNO75072 461 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 USP17L24Q0WX57 530 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 TRDNQ13061 729 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 NOM1Q5C9Z4 860 aaKnown RBP18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 ZKSCAN3Q9BRR0 538 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 TANGO6Q9C0B7 1094 aa18.75■□□□□ 0.59
CCDC28A-201ENST00000332797 E7EWF7 191 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 NT5C2P49902 561 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 CREB3L3Q68CJ9 461 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 C17orf99Q6UX52 265 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 CATSPERGQ6ZRH7 1159 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 MKL1Q969V6 931 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 P2RX7Q99572 595 aaKnown RBP18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 TCP11L1Q9NUJ3 509 aa18.74■□□□□ 0.59
CCDC28A-201ENST00000332797 F5H6K3 240 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 WDR46O15213 610 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 REC8O95072 547 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 SP3Q02447 781 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 KLRC3Q07444 240 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 NECTIN1Q15223 517 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 STOX1Q6ZVD7 989 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 RALYLQ86SE5 291 aaKnown RBP18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 IQCA1Q86XH1 822 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 CASP8AP2Q9UKL3 1982 aa18.73■□□□□ 0.59
CCDC28A-201ENST00000332797 NDUFB10O96000 172 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 HERVK_113P62684 666 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 GMCL1P1Q8NEA9 526 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 NCOA7Q8NI08 942 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 NUP88Q99567 741 aaPredicted RBP18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 ZSWIM5Q9P217 1185 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 SYNPO2Q9UMS6 1093 aa18.72■□□□□ 0.59
CCDC28A-201ENST00000332797 BCRP11274 1271 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 FAM83BQ5T0W9 1011 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 RNF20Q5VTR2 975 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 ANKRD13CQ8N6S4 541 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 CHMP4CQ96CF2 233 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 ZSCAN10Q96SZ4 725 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 UBAC1Q9BSL1 405 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 MTMR7Q9Y216 660 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 ECM2O94769 699 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 TOP1P11387 765 aaKnown RBP18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 GCLCP48506 637 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 NOVP48745 357 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 SLFN13Q68D06 897 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 SAMD1Q6SPF0 538 aaPredicted RBP18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 CYB5R4Q7L1T6 521 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 CD99L2Q8TCZ2 262 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 ERO1AQ96HE7 468 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 TMEM47Q9BQJ4 181 aa18.71■□□□□ 0.59
CCDC28A-201ENST00000332797 TNKSO95271 1327 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 FLOT1O75955 427 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 CCDC178Q5BJE1 867 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 RCSD1Q6JBY9 416 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 TTC14Q96N46 770 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 PAGR1Q9BTK6 254 aa18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 ISY1Q9ULR0 285 aaKnown RBP18.7■□□□□ 0.58
CCDC28A-201ENST00000332797 SPDYE16A6NNV3 312 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-201ENST00000332797 COG2Q14746 738 aa18.69■□□□□ 0.58
CCDC28A-201ENST00000332797 FAM110CQ1W6H9 321 aa18.69■□□□□ 0.58
CCDC28A-201ENST00000332797 ENAHQ8N8S7 591 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-201ENST00000332797 GTF3C2Q8WUA4 911 aaPredicted RBP18.69■□□□□ 0.58
CCDC28A-201ENST00000332797 PEX10O60683 326 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 MCCP23508 829 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 LACTBP83111 547 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 KIF22Q14807 665 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 COL13A1Q5TAT6 717 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 RASGRP2Q7LDG7 609 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 DGKHQ86XP1 1220 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 MB21D2Q8IYB1 491 aaPredicted RBP18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 FBXO28Q9NVF7 368 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 ZSWIM8A7E2V4 1837 aa18.68■□□□□ 0.58
CCDC28A-201ENST00000332797 PARP14Q460N5 1801 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 BMP3P12645 472 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 ZKSCAN1P17029 563 aaPredicted RBP18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 DSG3P32926 999 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 SLC1A4P43007 532 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 CHST3Q7LGC8 479 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 RASEFQ8IZ41 740 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms