RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 ACTN4O43707 911 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 PTPREP23469 700 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 FXR1P51114 621 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 MCTP2Q6DN12 878 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 SPATA20Q8TB22 786 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 ZNF594Q96JF6 807 aaPredicted RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 SYNRGQ9UMZ2 1314 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 ECM29Q5VYK3 1845 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 SH2B2O14492 632 aaPredicted RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 RANBP6O60518 1105 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 CIAO1O76071 339 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 USP14P54578 494 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 ERVK-24P63145 666 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 AKAP17AQ02040 695 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 RC3H1Q5TC82 1133 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 CDKAL1Q5VV42 579 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 APOA5Q6Q788 366 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 NOSTRINQ8IVI9 506 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 MICALL1Q8N3F8 863 aa20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 CCNL1Q9UK58 526 aaPredicted RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 ZC3H4Q9UPT8 1303 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-202ENST00000331148 ZFYP08048 801 aaPredicted RBP20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 IFIT5Q13325 482 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 PARP10Q53GL7 1025 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 MICU3Q86XE3 530 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 TMTC1Q8IUR5 882 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 TEX2Q8IWB9 1127 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 NBPF3Q9H094 633 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 DENND2AQ9ULE3 1009 aa20.45■□□□□ 0.86
CLSTN3-202ENST00000331148 SHOX2O60902 331 aaPredicted RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 IARSP41252 1262 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 MAP9Q49MG5 647 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 LRRC24Q50LG9 513 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 SWT1Q5T5J6 900 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 SUSD4Q5VX71 490 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 CYB5R4Q7L1T6 521 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 TTLL11Q8NHH1 800 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 CCDC85AQ96PX6 553 aaPredicted RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 CTAGE1Q96RT6 745 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 FBXO3Q9UK99 471 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 ZNF652Q9Y2D9 606 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 ITIH6Q6UXX5 1313 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 PDE8AO60658 829 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 TOB1P50616 345 aaPredicted RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 NTRK3Q16288 839 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 KANK3Q6NY19 840 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 NKX2-3Q8TAU0 364 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 APPBP2Q92624 585 aa20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 PUS7LQ9H0K6 701 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-202ENST00000331148 UBE2Q2LH0YL09 131 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 MCM3P25205 808 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 CTSWP56202 376 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 STX17P56962 302 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 CUL4BQ13620 913 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 E2F4Q16254 413 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 FILIP1LQ4L180 1135 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 CT47A1Q5JQC4 288 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 KLHL10Q6JEL2 608 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 CLEC4GQ6UXB4 293 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 SENP2Q9HC62 589 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 RNF216Q9NWF9 866 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 CD44P16070 742 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 STIM1Q13586 685 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 COG1Q8WTW3 980 aa20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 RIN2Q8WYP3 895 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 NIP7Q9Y221 180 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLSTN3-202ENST00000331148 SEMA3EO15041 775 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 TRAPPC11Q7Z392 1133 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 TBC1D10CQ8IV04 446 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 ZNF579Q8NAF0 562 aaKnown RBP20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 ABHD10Q9NUJ1 306 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 GOLGA8AA7E2F4 631 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 GPAA1O43292 621 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 ZBTB43O43298 467 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 RPS6KA4O75676 772 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 SKIDA1Q1XH10 827 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 CYP26C1Q6V0L0 522 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 KAT2BQ92831 832 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 CEP89Q96ST8 783 aa20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 PUS3Q9BZE2 481 aaKnown RBP20.42■□□□□ 0.86
CLSTN3-202ENST00000331148 BTBD18B2RXH4 712 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 ERLIN2O94905 339 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 GREM2Q9H772 168 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 FAM217BQ9NTX9 383 aaPredicted RBP20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 MYH3P11055 1940 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 STK36Q9NRP7 1315 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 CHRM1P11229 460 aaPredicted RBP20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 ITGA6P23229 1130 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 GGCXP38435 758 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 FAM196AQ6ZSG2 479 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 CCDC91Q7Z6B0 441 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 SLF1Q9BQI6 1058 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 SLC26A6Q9BXS9 759 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 LY75O60449 1722 aa20.41■□□□□ 0.86
CLSTN3-202ENST00000331148 ANKRD18BA2A2Z9 1011 aa20.4■□□□□ 0.86
CLSTN3-202ENST00000331148 CCT5P48643 541 aa20.4■□□□□ 0.86
CLSTN3-202ENST00000331148 USP49Q70CQ1 688 aa20.4■□□□□ 0.86
CLSTN3-202ENST00000331148 KRT27Q7Z3Y8 459 aa20.4■□□□□ 0.86
CLSTN3-202ENST00000331148 KAT14Q9H8E8 782 aa20.4■□□□□ 0.86
CLSTN3-202ENST00000331148 CEP126Q9P2H0 1117 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms