RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 GPIHBP1Q8IV16 184 aa22.53■■□□□ 1.2
CRLF3-201ENST00000324238 RASGRP4Q8TDF6 673 aa22.53■■□□□ 1.2
CRLF3-201ENST00000324238 GOLGA1Q92805 767 aa22.53■■□□□ 1.2
CRLF3-201ENST00000324238 CEP131Q9UPN4 1083 aa22.53■■□□□ 1.2
CRLF3-201ENST00000324238 ERVV-1B6SEH8 477 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 LONRF2Q1L5Z9 754 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 FAM182BQ5T319 152 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 ESR2Q92731 530 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 HINFPQ9BQA5 517 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 SLF1Q9BQI6 1058 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 SPATA20Q8TB22 786 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 MTRQ99707 1265 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 FUT8Q9BYC5 575 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 GDAQ9Y2T3 454 aa22.52■■□□□ 1.2
CRLF3-201ENST00000324238 DDX60Q8IY21 1712 aaKnown RBP22.52■■□□□ 1.19
CRLF3-201ENST00000324238 CAMTA2O94983 1202 aa22.51■■□□□ 1.19
CRLF3-201ENST00000324238 ZNF579Q8NAF0 562 aaKnown RBP22.51■■□□□ 1.19
CRLF3-201ENST00000324238 ZSCAN10Q96SZ4 725 aaPredicted RBP22.51■■□□□ 1.19
CRLF3-201ENST00000324238 N4BP1O75113 896 aaKnown RBP22.51■■□□□ 1.19
CRLF3-201ENST00000324238 PTF1AQ7RTS3 328 aa22.51■■□□□ 1.19
CRLF3-201ENST00000324238 XDHP47989 1333 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 CCDC66A2RUB6 948 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 KIF5CO60282 957 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 CYP2D6P10635 497 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 ERCC5P28715 1186 aaPredicted RBP22.5■■□□□ 1.19
CRLF3-201ENST00000324238 ERVK-24P63145 666 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 KRT31Q15323 416 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 TTC38Q5R3I4 469 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 NUP88Q99567 741 aaPredicted RBP22.5■■□□□ 1.19
CRLF3-201ENST00000324238 TRIM49BA6NDI0 452 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 USP17L12C9JPN9 530 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 USP17L21D6R901 530 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 MFAP3LO75121 409 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 PHACTR2O75167 634 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 IL17AQ16552 155 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 MARCH10Q8NA82 808 aaPredicted RBP22.5■■□□□ 1.19
CRLF3-201ENST00000324238 PHF20Q9BVI0 1012 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 AATFQ9NY61 560 aaKnown RBP eCLIP22.5■■□□□ 1.19
CRLF3-201ENST00000324238 SLIT2O94813 1529 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 FUT2Q10981 343 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 KANK3Q6NY19 840 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 CHP1Q99653 195 aa22.5■■□□□ 1.19
CRLF3-201ENST00000324238 GOLGA6L9A6NEM1 432 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 PP2D1A8MPX8 630 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 TXLNAP40222 546 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 CATIPQ7Z7H3 387 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 SRBD1Q8N5C6 995 aaKnown RBP22.49■■□□□ 1.19
CRLF3-201ENST00000324238 CELF1Q92879 486 aaKnown RBP22.49■■□□□ 1.19
CRLF3-201ENST00000324238 RNF41Q9H4P4 317 aaPredicted RBP22.49■■□□□ 1.19
CRLF3-201ENST00000324238 ANKZF1Q9H8Y5 726 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 ENC1O14682 589 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 TRIML1Q8N9V2 468 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 RABGGTAQ92696 567 aa22.49■■□□□ 1.19
CRLF3-201ENST00000324238 RNF26Q9BY78 433 aaPredicted RBP22.49■■□□□ 1.19
CRLF3-201ENST00000324238 MYO1BO43795 1136 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 NPY5RQ15761 445 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 NCAPH2Q6IBW4 605 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 GPKOWQ92917 476 aaPredicted RBP eCLIP22.48■■□□□ 1.19
CRLF3-201ENST00000324238 PDE11AQ9HCR9 933 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 NTSR2O95665 410 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 TMTC2Q8N394 836 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 ZNF384Q8TF68 577 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 PANX2Q96RD6 677 aa22.48■■□□□ 1.19
CRLF3-201ENST00000324238 XBP1P17861 261 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 FILIP1LQ4L180 1135 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 CDKAL1Q5VV42 579 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 GNAT2P19087 354 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 NLRP5P59047 1200 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 HDAC6Q9UBN7 1215 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 PNPLA7Q6ZV29 1317 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 TPM1P09493 284 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 LMAN1P49257 510 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 TROAPQ12815 778 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 SRGAP1Q7Z6B7 1085 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 SH3RF1Q7Z6J0 888 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 GDAP1L1Q96MZ0 367 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 GUCA1BQ9UMX6 200 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 SHANK3Q9BYB0 1731 aa22.47■■□□□ 1.19
CRLF3-201ENST00000324238 MYH2Q9UKX2 1941 aa22.46■■□□□ 1.19
CRLF3-201ENST00000324238 PBX1P40424 430 aa22.46■■□□□ 1.19
CRLF3-201ENST00000324238 NOA1Q8NC60 698 aaKnown RBP22.46■■□□□ 1.19
CRLF3-201ENST00000324238 ABCB6Q9NP58 842 aa22.46■■□□□ 1.19
CRLF3-201ENST00000324238 ANKRD18AQ8IVF6 992 aa22.46■■□□□ 1.19
CRLF3-201ENST00000324238 KRT9P35527 623 aa22.45■■□□□ 1.18
CRLF3-201ENST00000324238 IRX5P78411 483 aaPredicted RBP22.45■■□□□ 1.18
CRLF3-201ENST00000324238 RGS22Q8NE09 1264 aa22.45■■□□□ 1.18
CRLF3-201ENST00000324238 NELFBQ8WX92 580 aa22.45■■□□□ 1.18
CRLF3-201ENST00000324238 RIOK1Q9BRS2 568 aaKnown RBP22.45■■□□□ 1.18
CRLF3-201ENST00000324238 CDC23Q9UJX2 597 aa22.45■■□□□ 1.18
CRLF3-201ENST00000324238 RASSF8Q8NHQ8 419 aa22.45■■□□□ 1.18
CRLF3-201ENST00000324238 SRP68Q9UHB9 627 aaKnown RBP22.45■■□□□ 1.18
CRLF3-201ENST00000324238 ELOA2Q8IYF1 753 aaPredicted RBP22.44■■□□□ 1.18
CRLF3-201ENST00000324238 VPS18Q9P253 973 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 XIRP1Q702N8 1843 aaKnown RBP22.44■■□□□ 1.18
CRLF3-201ENST00000324238 SRGAP2O75044 1071 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 VSNL1P62760 191 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 UBXN1Q04323 297 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 CTR9Q6PD62 1173 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 IQCA1Q86XH1 822 aa22.44■■□□□ 1.18
CRLF3-201ENST00000324238 CTAGE9A4FU28 777 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms