RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 SH2D4AQ9H788 454 aa19.18■□□□□ 0.66
HDDC2-201ENST00000318787 TXNRD2Q9NNW7 524 aa19.18■□□□□ 0.66
HDDC2-201ENST00000318787 GREB1LQ9C091 1923 aaPredicted RBP19.17■□□□□ 0.66
HDDC2-201ENST00000318787 EEF2P13639 858 aaKnown RBP19.17■□□□□ 0.66
HDDC2-201ENST00000318787 ELNP15502 786 aa19.17■□□□□ 0.66
HDDC2-201ENST00000318787 CATSPERGQ6ZRH7 1159 aa19.17■□□□□ 0.66
HDDC2-201ENST00000318787 FAM227BQ96M60 508 aa19.17■□□□□ 0.66
HDDC2-201ENST00000318787 PLXNB2O15031 1838 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 A0A0D9SFI3 127 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ADCY3O60266 1144 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 RASA1P20936 1047 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ERVK-9P63128 1117 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ERVK-24P63145 666 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 NMIQ13287 307 aaPredicted RBP19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ZNF444Q8N0Y2 327 aaPredicted RBP19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ZNF287Q9HBT7 754 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 RBPJLQ9UBG7 517 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 MORF4L1Q9UBU8 362 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 ROBO3Q96MS0 1386 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 COL11A1P12107 1806 aaPredicted RBP19.16■□□□□ 0.66
HDDC2-201ENST00000318787 PARP14Q460N5 1801 aa19.16■□□□□ 0.66
HDDC2-201ENST00000318787 SLC3A2P08195 630 aaKnown RBP19.15■□□□□ 0.66
HDDC2-201ENST00000318787 PPARAQ07869 468 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 MTFR1Q15390 333 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 VPS53Q5VIR6 699 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 SLAIN1Q8ND83 568 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 GTF3C2Q8WUA4 911 aaPredicted RBP19.15■□□□□ 0.66
HDDC2-201ENST00000318787 KANSL2Q9H9L4 492 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 HELLSQ9NRZ9 838 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 PDE4DIPQ5VU43 2346 aa19.15■□□□□ 0.66
HDDC2-201ENST00000318787 KIAA0100Q14667 2235 aaKnown RBP19.14■□□□□ 0.66
HDDC2-201ENST00000318787 EN2P19622 333 aaPredicted RBP19.14■□□□□ 0.65
HDDC2-201ENST00000318787 UBXN2AP68543 259 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 PDE4BQ07343 736 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 Q3C1V9 767 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 KIAA1755Q5JYT7 1200 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 VCPKMTQ9H867 229 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 TMX2Q9Y320 296 aa19.14■□□□□ 0.65
HDDC2-201ENST00000318787 FLOT1O75955 427 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 CTDSPL2Q05D32 466 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 MCMDC2Q4G0Z9 681 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 SIAH1Q8IUQ4 282 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 PORCNQ9H237 461 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 GOPCQ9HD26 462 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 RLFQ13129 1914 aa19.13■□□□□ 0.65
HDDC2-201ENST00000318787 BRCA2P51587 3418 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 SPDYE16A6NNV3 312 aaPredicted RBP19.12■□□□□ 0.65
HDDC2-201ENST00000318787 TSPY3P0CV98 308 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 TSPY8P0CW00 308 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 CYP2B6P20813 491 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 PLS1Q14651 629 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 FAM47AQ5JRC9 791 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 LPAR1Q92633 364 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 TOMM22Q9NS69 142 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 DIAPH3Q9NSV4 1193 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 ISY1Q9ULR0 285 aaKnown RBP19.12■□□□□ 0.65
HDDC2-201ENST00000318787 RABGAP1Q9Y3P9 1069 aa19.12■□□□□ 0.65
HDDC2-201ENST00000318787 INHAP05111 366 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 CCL5P13501 91 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 SDSP20132 328 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 MAPK4P31152 587 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 CCNA1P78396 465 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 COG2Q14746 738 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 ZNF589Q86UQ0 364 aaPredicted RBP19.11■□□□□ 0.65
HDDC2-201ENST00000318787 RNF208Q9H0X6 261 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 OSBPL3Q9H4L5 887 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 BTBD7Q9P203 1132 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 CLIP2Q9UDT6 1046 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 A0A0G2JMZ2 1700 aa19.11■□□□□ 0.65
HDDC2-201ENST00000318787 CCDC171Q6TFL3 1326 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 WDR46O15213 610 aaKnown RBP19.1■□□□□ 0.65
HDDC2-201ENST00000318787 CNMDO75829 334 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 POTEEQ6S8J3 1075 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 CWC27Q6UX04 472 aaKnown RBP19.1■□□□□ 0.65
HDDC2-201ENST00000318787 GPR142Q7Z601 462 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 CHMP4CQ96CF2 233 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 NUDT12Q9BQG2 462 aa19.1■□□□□ 0.65
HDDC2-201ENST00000318787 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.1■□□□□ 0.65
HDDC2-201ENST00000318787 MKI67P46013 3256 aaKnown RBP19.1■□□□□ 0.65
HDDC2-201ENST00000318787 FOXP2O15409 715 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 PDE4AP27815 886 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 TFAP4Q01664 338 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 IRF5Q13568 498 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 RRP12Q5JTH9 1297 aaKnown RBP19.09■□□□□ 0.65
HDDC2-201ENST00000318787 FAM83BQ5T0W9 1011 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 PLEKHH3Q7Z736 793 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 LRRC47Q8N1G4 583 aaKnown RBP19.09■□□□□ 0.65
HDDC2-201ENST00000318787 CEP95Q96GE4 821 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 NUP88Q99567 741 aaPredicted RBP19.09■□□□□ 0.65
HDDC2-201ENST00000318787 UNC93B1Q9H1C4 597 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 INCENPQ9NQS7 918 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 HOXC10Q9NYD6 342 aa19.09■□□□□ 0.65
HDDC2-201ENST00000318787 TSPY2A6NKD2 308 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 HAND2P61296 217 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 PXYLP1Q8TE99 480 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 SOCS4Q8WXH5 440 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 ATG4CQ96DT6 458 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 FBXO28Q9NVF7 368 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 IVNS1ABPQ9Y6Y0 642 aa19.08■□□□□ 0.65
HDDC2-201ENST00000318787 RANBP6O60518 1105 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms