RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 TOGARAM2Q6ZUX3 1019 aa9.07□□□□□ -0.96
CNOT4-201ENST00000315544 SMIM5Q71RC9 77 aa9.07□□□□□ -0.96
CNOT4-201ENST00000315544 MTMR14Q8NCE2 650 aa9.07□□□□□ -0.96
CNOT4-201ENST00000315544 NSUN4Q96CB9 384 aaKnown RBP9.07□□□□□ -0.96
CNOT4-201ENST00000315544 GTPBP4Q9BZE4 634 aaKnown RBP9.07□□□□□ -0.96
CNOT4-201ENST00000315544 OGFRQ9NZT2 677 aa9.07□□□□□ -0.96
CNOT4-201ENST00000315544 ATP8B3O60423 1300 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 TSC2P49815 1807 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SNAP23O00161 211 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 PMS1P54277 932 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SLC9C2Q5TAH2 1124 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 CTR9Q6PD62 1173 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 NOL8Q76FK4 1167 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 NOSTRINQ8IVI9 506 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 LPIN2Q92539 896 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 GPATCH3Q96I76 525 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 DUSP9Q99956 384 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 KBTBD4Q9NVX7 518 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 TFCP2L1Q9NZI6 479 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 TBC1D2BQ9UPU7 963 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 CCDC69A6NI79 296 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 PRPF3O43395 683 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SHOX2O60902 331 aaPredicted RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 GABPAQ06546 454 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SF3A1Q15459 793 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 GRIK5Q16478 980 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 CC2D2BQ6DHV5 1058 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SP8Q8IXZ3 490 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 MBOAT7Q96N66 472 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 PANX2Q96RD6 677 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 NOL10Q9BSC4 688 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 MAD2L2Q9UI95 211 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 ATP6V0A2Q9Y487 856 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 AGPSO00116 658 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SPTLC2O15270 562 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 CUTAO60888 179 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 ZBTB7AO95365 584 aa9.06□□□□□ -0.96
CNOT4-201ENST00000315544 SRBD1Q8N5C6 995 aaKnown RBP9.06□□□□□ -0.96
CNOT4-201ENST00000315544 PFASO15067 1338 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 RBAK-RBAKDNI3L0D1 243 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 PDE6BP35913 854 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 FKBP4Q02790 459 aaKnown RBP eCLIP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 AIMP1Q12904 312 aaKnown RBP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 PNOCQ13519 176 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 FAM177A1Q8N128 213 aaPredicted RBP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 TRIML1Q8N9V2 468 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 SPATA5Q8NB90 893 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 FAM84BQ96KN1 310 aaPredicted RBP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 P2RX7Q99572 595 aaKnown RBP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 KIF3AQ9Y496 699 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 PCDHA5Q9Y5H7 936 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 CLCN6P51797 869 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 BEND6Q5SZJ8 279 aaPredicted RBP9.05□□□□□ -0.96
CNOT4-201ENST00000315544 CLIP2Q9UDT6 1046 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 PLXNA1Q9UIW2 1896 aa9.05□□□□□ -0.96
CNOT4-201ENST00000315544 RCCD1A6NED2 376 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 AARSP49588 968 aaKnown RBP eCLIP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 PUM3Q15397 648 aaKnown RBP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 RNF26Q9BY78 433 aaPredicted RBP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 ALPK3Q96L96 1907 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 FRMD3A2A2Y4 597 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 H3BQF6 201 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 GRIN3BO60391 1043 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 ECHS1P30084 290 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 ZNF280AP59817 542 aaPredicted RBP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 SOGA3Q5TF21 947 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 ERO1AQ96HE7 468 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 MTMR9Q96QG7 549 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 GAKO14976 1311 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 IFIT1P09914 478 aaKnown RBP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 ERCC5P28715 1186 aaPredicted RBP9.04□□□□□ -0.96
CNOT4-201ENST00000315544 SEMA3FQ13275 785 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 HYIQ5T013 277 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 AOPEPQ8N6M6 819 aa9.04□□□□□ -0.96
CNOT4-201ENST00000315544 FANCCQ00597 558 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 STK3Q13188 491 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 AKNAD1Q5T1N1 836 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 PSD3Q9NYI0 1048 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 HERVK_113P62684 666 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 CDK17Q00537 523 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 GABPB1Q06547 395 aaPredicted RBP9.03□□□□□ -0.96
CNOT4-201ENST00000315544 ERFEQ4G0M1 354 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 NCOA7Q8NI08 942 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 TMEM59LQ9UK28 342 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 TEX33O43247 280 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 ETF1P62495 437 aaKnown RBP9.03□□□□□ -0.96
CNOT4-201ENST00000315544 CCT2P78371 535 aaKnown RBP9.03□□□□□ -0.96
CNOT4-201ENST00000315544 MTF1Q14872 753 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 TTI2Q6NXR4 508 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 TMTC3Q6ZXV5 915 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 DNAJC5GQ8N7S2 189 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 JMYQ8N9B5 988 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 PAGE5Q96GU1 130 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 SH3GL2Q99962 352 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 L1RE1Q9UN81 338 aa9.03□□□□□ -0.96
CNOT4-201ENST00000315544 PALM3A6NDB9 673 aaPredicted RBP9.02□□□□□ -0.96
CNOT4-201ENST00000315544 TUBB4AP04350 444 aa9.02□□□□□ -0.96
CNOT4-201ENST00000315544 PNMA6AP0CW24 399 aaPredicted RBP9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms