RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 USPL1Q5W0Q7 1092 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CDHR2Q9BYE9 1310 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CTAGE15A4D2H0 777 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 MARCH6O60337 910 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CTAGE8P0CG41 777 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 HLFQ16534 295 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CTAGE6Q86UF2 777 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CTAGE4Q8IX94 777 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 NOC3LQ8WTT2 800 aaKnown RBP16.51■□□□□ 0.23
PTPN9-201ENST00000306726 ABCB6Q9NP58 842 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 POLR3EQ9NVU0 708 aa16.51■□□□□ 0.23
PTPN9-201ENST00000306726 GOLGB1Q14789 3259 aaKnown RBP16.51■□□□□ 0.23
PTPN9-201ENST00000306726 CTAGE9A4FU28 777 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 FOXR1Q6PIV2 292 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 RBM43Q6ZSC3 357 aaKnown RBP16.5■□□□□ 0.23
PTPN9-201ENST00000306726 ZNF34Q8IZ26 560 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.5■□□□□ 0.23
PTPN9-201ENST00000306726 NACAP1Q9BZK3 213 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 SEC31BQ9NQW1 1179 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 TMEM51Q9NW97 253 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 ADAM21Q9UKJ8 722 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 PCCAP05165 728 aaPredicted RBP16.5■□□□□ 0.23
PTPN9-201ENST00000306726 PDE6AP16499 860 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 CXCR5P32302 372 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 ATP2B2Q01814 1243 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 MAP3K12Q12852 859 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 CC2D1AQ6P1N0 951 aaPredicted RBP16.5■□□□□ 0.23
PTPN9-201ENST00000306726 TFCP2L1Q9NZI6 479 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 NOSTRINQ8IVI9 506 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 OSBPL5Q9H0X9 879 aaPredicted RBP16.5■□□□□ 0.23
PTPN9-201ENST00000306726 PARP3Q9Y6F1 533 aa16.5■□□□□ 0.23
PTPN9-201ENST00000306726 ERLIN1O75477 346 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 TADA3O75528 432 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 CYP27A1Q02318 531 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 PROM2Q8N271 834 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 KCNB2Q92953 911 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 DEF6Q9H4E7 631 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 CWC15Q9P013 229 aaKnown RBP16.49■□□□□ 0.23
PTPN9-201ENST00000306726 PSDA5PKW4 1024 aaPredicted RBP16.49■□□□□ 0.23
PTPN9-201ENST00000306726 TRIM75PA6NK02 468 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 NUP98P52948 1817 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 A0A1W2PQ27 194 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 A0A1W2PQ64 194 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 A0A1W2PQD8 194 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 E2F4Q16254 413 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
PTPN9-201ENST00000306726 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 WTIPA6NIX2 430 aaPredicted RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 TRMT1LQ7Z2T5 733 aaKnown RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 ARHGEF1Q92888 912 aaKnown RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 CPVLQ9H3G5 476 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 H0YHG0 523 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 MYO1BO43795 1136 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 ZEB2O60315 1214 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 CCDC178Q5BJE1 867 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 CTR9Q6PD62 1173 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 REXO1L1PQ8IX06 675 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 NLGN1Q8N2Q7 840 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 TRIM49BA6NDI0 452 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 NMT2O60551 498 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 IDEP14735 1019 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 XBP1P17861 261 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 TRIM21P19474 475 aaKnown RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 EN1Q05925 392 aaPredicted RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 ZBTB38Q8NAP3 1195 aaPredicted RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 SLC16A10Q8TF71 515 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 TRIM47Q96LD4 638 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 GNL3LQ9NVN8 582 aaKnown RBP16.48■□□□□ 0.23
PTPN9-201ENST00000306726 DACH1Q9UI36 760 aa16.48■□□□□ 0.23
PTPN9-201ENST00000306726 EFCAB8A8MWE9 144 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 H7C1W4 665 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 BMP6P22004 513 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 SLC15A2Q16348 729 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 RAD9BQ6WBX8 426 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 SYMPKQ92797 1274 aaKnown RBP16.47■□□□□ 0.23
PTPN9-201ENST00000306726 PLA2G12BQ9BX93 195 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 SYNRGQ9UMZ2 1314 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 RIC1Q4ADV7 1423 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 FANCGO15287 622 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 EZH2Q15910 746 aaKnown RBP16.47■□□□□ 0.23
PTPN9-201ENST00000306726 CCDC122Q5T0U0 273 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 MB21D2Q8IYB1 491 aaPredicted RBP16.47■□□□□ 0.23
PTPN9-201ENST00000306726 MICALL1Q8N3F8 863 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 H3BQF6 201 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 NLRP10Q86W26 655 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 IFNL3Q8IZI9 196 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 TXLNBQ8N3L3 684 aa16.47■□□□□ 0.23
PTPN9-201ENST00000306726 GPKOWQ92917 476 aaPredicted RBP eCLIP16.47■□□□□ 0.23
PTPN9-201ENST00000306726 EIF3JO75822 258 aaKnown RBP16.46■□□□□ 0.23
PTPN9-201ENST00000306726 SETDB2Q96T68 719 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 GDAQ9Y2T3 454 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 RUFY1Q96T51 708 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 TSPYL1Q9H0U9 437 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 SMARCAL1Q9NZC9 954 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 STX8Q9UNK0 236 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 COL24A1Q17RW2 1714 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 CUTAO60888 179 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 TBC1D8O95759 1140 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 LCORLQ8N3X6 602 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms