RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 MAGEA1P43355 309 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 CDAN1Q8IWY9 1227 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 CHURC1Q8WUH1 139 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 OGFRQ9NZT2 677 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 SLC8A3P57103 927 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 MTX1Q13505 466 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 MCTP2Q6DN12 878 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 TICAM2Q86XR7 235 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 PNMA1Q8ND90 353 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 MAP4K1Q92918 833 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 ZEB2O60315 1214 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 DDAH1O94760 285 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 ZBTB16Q05516 673 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 CPLX4Q7Z7G2 160 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 GPR161Q8N6U8 529 aaKnown RBP17.72■□□□□ 0.43
USP42-201ENST00000306177 FLAD1Q8NFF5 587 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 IVNS1ABPQ9Y6Y0 642 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 CLTCL1P53675 1640 aa17.72■□□□□ 0.43
USP42-201ENST00000306177 PCP11498 1178 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 CCDC14Q49A88 953 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 MSL1Q68DK7 614 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 CCDC121Q6ZUS5 278 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 CMTR1Q8N1G2 835 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 NUCKS1Q9H1E3 243 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 AZI2Q9H6S1 392 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 AGTPBP1Q9UPW5 1226 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 RAD51AP2Q09MP3 1159 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 MAPK8IP2Q13387 824 aaPredicted RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 ACTN4O43707 911 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 DNAJC21Q5F1R6 531 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 UTP14CQ5TAP6 766 aaKnown RBP17.71■□□□□ 0.43
USP42-201ENST00000306177 CEP128Q6ZU80 1094 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.71■□□□□ 0.43
USP42-201ENST00000306177 KCNK9Q9NPC2 374 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 A2ML1A8K2U0 1454 aa17.71■□□□□ 0.43
USP42-201ENST00000306177 FLOT1O75955 427 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 ERCC5P28715 1186 aaPredicted RBP17.7■□□□□ 0.42
USP42-201ENST00000306177 KLHL30Q0D2K2 578 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 INF2Q27J81 1249 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 GALNT17Q6IS24 598 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 XPO4Q9C0E2 1151 aaKnown RBP17.7■□□□□ 0.42
USP42-201ENST00000306177 FAM169AQ9Y6X4 670 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 GNA14O95837 355 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 SCG2P13521 617 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 CMA1P23946 247 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 CARD6Q9BX69 1037 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 BCRP11274 1271 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 ARL1P40616 181 aaPredicted RBP17.7■□□□□ 0.42
USP42-201ENST00000306177 KIFC2Q96AC6 838 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 RIOK3O14730 519 aaKnown RBP17.7■□□□□ 0.42
USP42-201ENST00000306177 NR1I2O75469 434 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 SFMBT2Q5VUG0 894 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 UIMC1Q96RL1 719 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 HEG1Q9ULI3 1381 aa17.7■□□□□ 0.42
USP42-201ENST00000306177 PDIA3P30101 505 aaKnown RBP17.69■□□□□ 0.42
USP42-201ENST00000306177 ZMYM1Q5SVZ6 1142 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 MNAT1P51948 309 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 CCDC51Q96ER9 411 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 CTTNBP2NLQ9P2B4 639 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 KCNG1Q9UIX4 513 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 ZNF804BA4D1E1 1349 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 GAS7O60861 476 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 BTDP43251 543 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 BAG6P46379 1132 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 TNFAIP1Q13829 316 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 SMC6Q96SB8 1091 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 UTP11Q9Y3A2 253 aaKnown RBP17.69■□□□□ 0.42
USP42-201ENST00000306177 ATP5DP30049 168 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 CCDC6Q16204 474 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 RASEFQ8IZ41 740 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 PSTPIP2Q9H939 334 aa17.69■□□□□ 0.42
USP42-201ENST00000306177 KLRF2D3W0D1 207 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 SAMD15Q9P1V8 674 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 TSKSQ9UJT2 592 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 TPH2Q8IWU9 490 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 IFT20Q8IY31 132 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 SLF1Q9BQI6 1058 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 SEMA3EO15041 775 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 SNX16P57768 344 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 TRIML1Q8N9V2 468 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 TTC16Q8NEE8 873 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 ERCC3P19447 782 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 ZNF365Q70YC5 407 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 TRPC5Q9UL62 973 aaPredicted RBP17.68■□□□□ 0.42
USP42-201ENST00000306177 RNASE9P60153 205 aaKnown RBP17.68■□□□□ 0.42
USP42-201ENST00000306177 TAF12Q16514 161 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 NEK8Q86SG6 692 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 SYCE1Q8N0S2 351 aa17.68■□□□□ 0.42
USP42-201ENST00000306177 C17orf53Q8N3J3 647 aaPredicted RBP17.68■□□□□ 0.42
USP42-201ENST00000306177 SCRN1Q12765 414 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 ADCK5Q3MIX3 580 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 GPHNQ9NQX3 736 aaPredicted RBP17.67■□□□□ 0.42
USP42-201ENST00000306177 U2AF2P26368 475 aaKnown RBP eCLIP17.67■□□□□ 0.423e-6■■■□□ 15.4
USP42-201ENST00000306177 MRPS9P82933 396 aaKnown RBP17.67■□□□□ 0.42
USP42-201ENST00000306177 NLRX1Q86UT6 975 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 NKIRAS1Q9NYS0 192 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 FRMPD2Q68DX3 1309 aaPredicted RBP17.67■□□□□ 0.42
USP42-201ENST00000306177 OR52Z1P0C646 297 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 DNM2P50570 870 aa17.67■□□□□ 0.42
USP42-201ENST00000306177 LONRF3Q496Y0 759 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms