RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LRIG3Q6UXM1 1119 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SRRM1Q8IYB3 904 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 L2HGDHQ9H9P8 463 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ZFYVE1Q9HBF4 777 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ZSWIM6Q9HCJ5 1215 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 MBIPQ9NS73 344 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 PUF60Q9UHX1 559 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 RRP15Q9Y3B9 282 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 BAZ2BQ9UIF8 2168 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 GGPS1O95749 300 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC62Q6P9F0 684 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 FOXR2Q6PJQ5 311 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 BRF1Q92994 677 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 DHTKD1Q96HY7 919 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SPAG5Q96R06 1193 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 TRIM6Q9C030 488 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 HLTFQ14527 1009 aaKnown RBP eCLIP5.78□□□□□ -1.486e-7■■■■□ 22.5
SCN1A-201ENST00000303395 TERB1Q8NA31 727 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 NEK11Q8NG66 645 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CAPS2Q9BXY5 557 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 A1CFQ9NQ94 594 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 UTP11Q9Y3A2 253 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 SPECC1L-ADORA2AF8WAN1 911 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 IGHDP01880 384 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CLNS1AP54105 237 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF569Q5MCW4 686 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 TEDDM1Q5T9Z0 273 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ANKLE2Q86XL3 938 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF513Q8N8E2 541 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ZCRB1Q8TBF4 217 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CACNA1FO60840 1977 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 A0A1W2PQC6 194 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 MIF4GDA9UHW6 222 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 GSTA1P08263 222 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 OAS2P29728 719 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 MCM9Q9NXL9 1143 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ITIH6Q6UXX5 1313 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 GOLGA8AA7E2F4 631 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 BAG3O95817 575 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ASPHQ12797 758 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 KRBA2Q6ZNG9 492 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 VPS52Q8N1B4 723 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 NME8Q8N427 588 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 RBSNQ9H1K0 784 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 NOP53Q9NZM5 478 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 STOML1Q9UBI4 398 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ERICH4A6NGS2 130 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PPP1R12AO14974 1030 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CYP2E1P05181 493 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CYP2C19P33261 490 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PDE6CP51160 858 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PSMD2Q13200 908 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 TBCCQ15814 346 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 SWT1Q5T5J6 900 aaKnown RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 KIFAP3Q92845 792 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CDCA7Q9BWT1 371 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PNPLA6Q8IY17 1366 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 SYNRGQ9UMZ2 1314 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 MYH11P35749 1972 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 SEL1L2Q5TEA6 688 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF530Q6P9A1 599 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-201ENST00000303395 NUP133Q8WUM0 1156 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CAPZA3Q96KX2 299 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 TRIM47Q96LD4 638 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 IL1RAPL1Q9NZN1 696 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CEP152O94986 1710 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 RASGRF2O14827 1237 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 MAFGO15525 162 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ZEB2O60315 1214 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PYGLP06737 847 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 ATP5JP18859 108 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 FANCCQ00597 558 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 PALM2Q8IXS6 379 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 TMCO5AQ8N6Q1 288 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 CFAP36Q96G28 342 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 IFT122Q9HBG6 1241 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 VPS18Q9P253 973 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 MYO3AQ8NEV4 1616 aa5.78□□□□□ -1.48
SCN1A-201ENST00000303395 KDRP35968 1356 aa5.77□□□□□ -1.48
SCN1A-201ENST00000303395 IGHMBP2P38935 993 aaKnown RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 SPATA1Q5VX52 437 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 SULT6B1Q6IMI4 303 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 SLC12A5Q9H2X9 1139 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 IQGAP1P46940 1657 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 SH3TC1Q8TE82 1336 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 LIN7AO14910 233 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 RNF113AO15541 343 aaKnown RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 PCSK2P16519 638 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 PHBP35232 272 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 YWHAEP62258 255 aaKnown RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 MRPS35P82673 323 aaKnown RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 AKAP4Q5JQC9 854 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 KRT25Q7Z3Z0 450 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 SESTD1Q86VW0 696 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 PROM2Q8N271 834 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 FRMD8Q9BZ67 464 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 RIC8AQ9NPQ8 531 aa5.77□□□□□ -1.49
SCN1A-201ENST00000303395 TPX2Q9ULW0 747 aaKnown RBP5.77□□□□□ -1.49
SCN1A-201ENST00000303395 PPME1Q9Y570 386 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms