RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 STMN4Q9H169 189 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 ACTR5Q9H9F9 607 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 CHPF2Q9P2E5 772 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 TRIM75PA6NK02 468 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 FBLN1P23142 703 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 GNAQP50148 359 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 CCDC92Q53HC0 331 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 GALNT17Q6IS24 598 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 CCDC84Q86UT8 332 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 IL17REQ8NFR9 667 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 ATP2A3Q93084 1043 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 ADAM21Q9UKJ8 722 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 SSX2IPQ9Y2D8 614 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 KIAA0753Q2KHM9 967 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 NBPF9Q3BBW0 867 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 IFNL2Q8IZJ0 200 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 FLCNQ8NFG4 579 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 DCAF5Q96JK2 942 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 ZBTB43O43298 467 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 CPP00450 1065 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 PFKFB1P16118 471 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 AARSP49588 968 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS35-201ENST00000299138 HNRNPH2P55795 449 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 KIF23Q02241 960 aaPredicted RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 MCTP2Q6DN12 878 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 TRIM55Q9BYV6 548 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 ABCB11O95342 1321 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 NFAT5O94916 1531 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 MAP2K7O14733 419 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 PDIA3P30101 505 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 ISM2Q6H9L7 571 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 FOXR2Q6PJQ5 311 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 USP37Q86T82 979 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 RNF10Q8N5U6 811 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 BAIAP2L1Q9UHR4 511 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 KLF18A0A0U1RQI7 1052 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 RPSAP08865 295 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 IFNAR1P17181 557 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 GUCY2CP25092 1073 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 ZNF131P52739 623 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 MTMR3Q13615 1198 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 RASIP1Q5U651 963 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 NBPF6Q5VWK0 638 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 SGMS1Q86VZ5 419 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 LRRC45Q96CN5 670 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 NBPF4Q96M43 638 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 A1CFQ9NQ94 594 aaKnown RBP7.12□□□□□ -1.27
VPS35-201ENST00000299138 STK38LQ9Y2H1 464 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 TACC3Q9Y6A5 838 aa7.12□□□□□ -1.27
VPS35-201ENST00000299138 H7C1D1 291 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 SLC4A1P02730 911 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 C11orf57Q6ZUT1 292 aaPredicted RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 DHX40Q8IX18 779 aaKnown RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 TRIM58Q8NG06 486 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 IFT74Q96LB3 600 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 ALG1Q9BT22 464 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 MON2Q7Z3U7 1717 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 TLDC2A0PJX2 215 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 PRLRP16471 622 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 IRX5P78411 483 aaPredicted RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 ATP2B2Q01814 1243 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 MUM1Q2TAK8 710 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 CCDC144BQ3MJ40 725 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 CFAP157Q5JU67 520 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 VPS36Q86VN1 386 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 CCHCR1Q8TD31 782 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 ANKRD27Q96NW4 1050 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 MTUS1Q9ULD2 1270 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 SATB2Q9UPW6 733 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 SALL1Q9NSC2 1324 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 LAD1O00515 517 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 PSMA7O14818 248 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 SLC26A4O43511 780 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 HMGB2P26583 209 aaKnown RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 ADCK5Q3MIX3 580 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 RUFY4Q6ZNE9 571 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 PFDN4Q9NQP4 134 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 NFE2L3Q9Y4A8 694 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 PRR36Q9H6K5 1346 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 CFAP65Q6ZU64 1925 aaKnown RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 SLC8A1P32418 973 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 CDK17Q00537 523 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 NT5DC1Q5TFE4 455 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 YTHDF3Q7Z739 585 aaKnown RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 RSPH3Q86UC2 560 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 NAP1L4Q99733 375 aaKnown RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 BMP2KQ9NSY1 1161 aaPredicted RBP7.11□□□□□ -1.27
VPS35-201ENST00000299138 HPSEQ9Y251 543 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 JRKLQ9Y4A0 524 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 PARP3Q9Y6F1 533 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 BIRC2Q13490 618 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 KRT24Q2M2I5 525 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 RESP18Q5W5W9 173 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 IRAK4Q9NWZ3 460 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 C3P01024 1663 aa7.11□□□□□ -1.27
VPS35-201ENST00000299138 GOLGA8AA7E2F4 631 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 FOXO3O43524 673 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 CYP21A2P08686 494 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 FECHP22830 423 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms