RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PCDHAC2Q9Y5I4 1007 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 SEMA3EO15041 775 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 ARHGAP6O43182 974 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 HTRA3P83110 453 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 GPS2Q13227 327 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 NBPF9Q3BBW0 867 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 RSRC2Q7L4I2 434 aaKnown RBP11.81□□□□□ -0.52
UPF3B-201ENST00000276201 VSTM4Q8IW00 320 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.81□□□□□ -0.52
UPF3B-201ENST00000276201 HSD3B7Q9H2F3 369 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 MYH7P12883 1935 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 POLR2AP24928 1970 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 WNT10BO00744 389 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 SPTLC2O15270 562 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 DHX16O60231 1041 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 FDPSP14324 419 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 HNRNPH2P55795 449 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 MAP3K9P80192 1104 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 APOBRQ0VD83 1088 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 STK38Q15208 465 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 AXDND1Q5T1B0 1012 aaPredicted RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 ANGEL2Q5VTE6 544 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 MTMR14Q8NCE2 650 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 MNS1Q8NEH6 495 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 RABGGTAQ92696 567 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 DBNDD2Q9BQY9 259 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 FTOQ9C0B1 505 aaKnown RBP eCLIP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 DENND2AQ9ULE3 1009 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 TTF2Q9UNY4 1162 aaKnown RBP11.8□□□□□ -0.52
UPF3B-201ENST00000276201 ECM29Q5VYK3 1845 aa11.8□□□□□ -0.52
UPF3B-201ENST00000276201 ZNF202O95125 648 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 CAPN2P17655 700 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 CEBPZQ03701 1054 aaKnown RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 TBX2Q13207 712 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 TUBB2AQ13885 445 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 CFAP100Q494V2 611 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 GORABQ5T7V8 394 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 DLK2Q6UY11 383 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 LRRN4CLQ8ND94 238 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 WDR66Q8TBY9 1149 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 DCPSQ96C86 337 aaKnown RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 TUBB2BQ9BVA1 445 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 ST7Q9NRC1 585 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 HPSEQ9Y251 543 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 ADM5C9JUS6 153 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 E7EWF7 191 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 PPP6R2O75170 966 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 TBC1D8O95759 1140 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 CDK11BP21127 795 aaKnown RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 ARID4AP29374 1257 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 MYL5Q02045 173 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 DLGAP5Q15398 846 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 MYSM1Q5VVJ2 828 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 CC2D1AQ6P1N0 951 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 KRT26Q7Z3Y9 468 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 TMEM139Q8IV31 216 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 FBXO18Q8NFZ0 1043 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 EXOC4Q96A65 974 aa11.79□□□□□ -0.52
UPF3B-201ENST00000276201 PDS5AQ29RF7 1337 aaKnown RBP11.79□□□□□ -0.52
UPF3B-201ENST00000276201 A0A1B0GVL5 298 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 SPDYE2BA6NHP3 402 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 SPDYE6P0CI01 402 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 HOMER1Q86YM7 354 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 SERPINA10Q9UK55 444 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 SUGT1Q9Y2Z0 365 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 PITPNM2Q9BZ72 1349 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 TRPM7Q96QT4 1865 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 BRD3Q15059 726 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 PI16Q6UXB8 463 aa11.78□□□□□ -0.52
UPF3B-201ENST00000276201 HNRNPLLQ8WVV9 542 aaKnown RBP11.78□□□□□ -0.52
UPF3B-201ENST00000276201 SCAF8Q9UPN6 1271 aaKnown RBP11.78□□□□□ -0.52
UPF3B-201ENST00000276201 POTEB2H3BUK9 544 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 STX10O60499 249 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 PRDX5P30044 214 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 CRKP46108 304 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 SLC39A14Q15043 492 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 SF3A1Q15459 793 aaKnown RBP11.77□□□□□ -0.52
UPF3B-201ENST00000276201 ANO1Q5XXA6 986 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 CCDC129Q6ZRS4 1044 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 SULF1Q8IWU6 871 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 PRMT6Q96LA8 375 aaPredicted RBP11.77□□□□□ -0.52
UPF3B-201ENST00000276201 CREBZFQ9NS37 354 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 MRFAP1Q9Y605 127 aa11.77□□□□□ -0.52
UPF3B-201ENST00000276201 VWA3AA6NCI4 1184 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 TMEM88BA6NKF7 163 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 UQCRFS1P1P0C7P4 283 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 MCAMP43121 646 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 RBM5P52756 815 aaKnown RBP eCLIP11.77□□□□□ -0.53
UPF3B-201ENST00000276201 UBASH3AP57075 661 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 CST9Q5W186 159 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 JMYQ8N9B5 988 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 SPATA5Q8NB90 893 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 IPO4Q8TEX9 1081 aaKnown RBP11.77□□□□□ -0.53
UPF3B-201ENST00000276201 EDC3Q96F86 508 aaKnown RBP11.77□□□□□ -0.53
UPF3B-201ENST00000276201 C8orf76Q96K31 380 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 CWC15Q9P013 229 aaKnown RBP11.77□□□□□ -0.53
UPF3B-201ENST00000276201 CLIC4Q9Y696 253 aa11.77□□□□□ -0.53
UPF3B-201ENST00000276201 MAST3O60307 1309 aa11.76□□□□□ -0.53
UPF3B-201ENST00000276201 CCDC151A5D8V7 595 aa11.76□□□□□ -0.53
UPF3B-201ENST00000276201 ERICH4A6NGS2 130 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms