RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 MTMR2Q13614 643 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 SGMS1Q86VZ5 419 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 REM2Q8IYK8 340 aaPredicted RBP16.58■□□□□ 0.24
VPS25-201ENST00000253794 TMTC2Q8N394 836 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 LPAR1Q92633 364 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 TMEM47Q9BQJ4 181 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 ZKSCAN3Q9BRR0 538 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 VCPKMTQ9H867 229 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 LY9Q9HBG7 655 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 CLIP2Q9UDT6 1046 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 CYP46A1Q9Y6A2 500 aa16.58■□□□□ 0.24
VPS25-201ENST00000253794 WDR33Q9C0J8 1336 aaKnown RBP16.57■□□□□ 0.24
VPS25-201ENST00000253794 ERICH2A1L162 156 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 TRIM75PA6NK02 468 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 IFIT3O14879 490 aaKnown RBP16.57■□□□□ 0.24
VPS25-201ENST00000253794 MAP2K2P36507 400 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 HTRA3P83110 453 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 TMEM67Q5HYA8 995 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 FASTKD5Q7L8L6 764 aaKnown RBP16.57■□□□□ 0.24
VPS25-201ENST00000253794 EMILIN3Q9NT22 766 aa16.57■□□□□ 0.24
VPS25-201ENST00000253794 SNHG28P0DPA3 235 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 TM4SF4P48230 202 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 VEGFBP49765 207 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 EVCP57679 992 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 WTAPQ15007 396 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 IFIT1BQ5T764 474 aaKnown RBP16.56■□□□□ 0.24
VPS25-201ENST00000253794 CHST3Q7LGC8 479 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 BRI3BPQ8WY22 251 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 GMCL1Q96IK5 515 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 GOPCQ9HD26 462 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 ZCCHC17Q9NP64 241 aaKnown RBP16.56■□□□□ 0.24
VPS25-201ENST00000253794 SLC45A1Q9Y2W3 748 aa16.56■□□□□ 0.24
VPS25-201ENST00000253794 MYH4Q9Y623 1939 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 CCL15-CCL14A0A0B4J2E2 113 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 F5H6K3 240 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 RCAN1P53805 252 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 HMGCS2P54868 508 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 KLRC3Q07444 240 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 SREBF2Q12772 1141 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 CCL15Q16663 113 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 GPAT2Q6NUI2 795 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 LRRC47Q8N1G4 583 aaKnown RBP16.55■□□□□ 0.24
VPS25-201ENST00000253794 PNMA1Q8ND90 353 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 FEZ1Q99689 392 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 KAT14Q9H8E8 782 aa16.55■□□□□ 0.24
VPS25-201ENST00000253794 WDR46O15213 610 aaKnown RBP16.54■□□□□ 0.24
VPS25-201ENST00000253794 NDUFB10O96000 172 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 CPA1P15085 419 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 VCAM1P19320 739 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 HOXA7P31268 230 aaPredicted RBP16.54■□□□□ 0.24
VPS25-201ENST00000253794 ATP2B2Q01814 1243 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 KIF23Q02241 960 aaPredicted RBP16.54■□□□□ 0.24
VPS25-201ENST00000253794 RABEP1Q15276 862 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 KIAA1755Q5JYT7 1200 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 ANKRD23Q86SG2 305 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 DNAJC5GQ8N7S2 189 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 MAP3K14Q99558 947 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 UPF3BQ9BZI7 483 aaKnown RBP16.54■□□□□ 0.24
VPS25-201ENST00000253794 SENP2Q9HC62 589 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 TMOD4Q9NZQ9 345 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 AGTPBP1Q9UPW5 1226 aa16.54■□□□□ 0.24
VPS25-201ENST00000253794 DDAH1O94760 285 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 TROAPQ12815 778 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 TOB2Q14106 344 aaPredicted RBP16.53■□□□□ 0.24
VPS25-201ENST00000253794 Q6ZUG5 572 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 PAXIP1Q6ZW49 1069 aaPredicted RBP16.53■□□□□ 0.24
VPS25-201ENST00000253794 DCAF4Q8WV16 495 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 TCEANC2Q96MN5 208 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 ZIC5Q96T25 663 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 PTPN18Q99952 460 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 GPHNQ9NQX3 736 aaPredicted RBP16.53■□□□□ 0.24
VPS25-201ENST00000253794 CEP350Q5VT06 3117 aa16.53■□□□□ 0.24
VPS25-201ENST00000253794 NID2Q14112 1375 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 PLA2G6O60733 806 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 AOC2O75106 756 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 PDHBP11177 359 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 MKRN3Q13064 507 aaKnown RBP16.52■□□□□ 0.24
VPS25-201ENST00000253794 DGKZQ13574 1117 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 TREML2Q5T2D2 321 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 SLFN13Q68D06 897 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 LRRC2Q9BYS8 371 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 PDRG1Q9NUG6 133 aa16.52■□□□□ 0.24
VPS25-201ENST00000253794 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.52■□□□□ 0.24
VPS25-201ENST00000253794 MYPNQ86TC9 1320 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 BTBD19C9JJ37 291 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 PABPC4Q13310 644 aaKnown RBP eCLIP16.51■□□□□ 0.236e-8■■■□□ 16.5
VPS25-201ENST00000253794 ANKRD1Q15327 319 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 ZYXQ15942 572 aaKnown RBP16.51■□□□□ 0.23
VPS25-201ENST00000253794 APOA5Q6Q788 366 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 CATIPQ7Z7H3 387 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 IFNL1Q8IU54 200 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 ZNF654Q8IZM8 581 aa16.51■□□□□ 0.23
VPS25-201ENST00000253794 CCDC69A6NI79 296 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L15C9J2P7 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L13C9JLJ4 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L11C9JVI0 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L18D6R9N7 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L22D6RA61 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L17D6RBQ6 530 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms