RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 WHAMMQ8TF30 809 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 GIMAP6Q6P9H5 292 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 CROCCP2Q86T23 111 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 SNX29Q8TEQ0 813 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 BUB1BO60566 1050 aaPredicted RBP14.16□□□□□ -0.14
USP40-201ENST00000251722 USPL1Q5W0Q7 1092 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 NCAPH2Q6IBW4 605 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 SPATS2Q86XZ4 545 aaKnown RBP14.16□□□□□ -0.14
USP40-201ENST00000251722 IL17REQ8NFR9 667 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 ZSCAN10Q96SZ4 725 aaPredicted RBP14.16□□□□□ -0.14
USP40-201ENST00000251722 TXNDC16Q9P2K2 825 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 LUC7L3O95232 432 aaKnown RBP14.16□□□□□ -0.14
USP40-201ENST00000251722 BCRP11274 1271 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 SYT1P21579 422 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 KIF11P52732 1056 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 CCDC6Q16204 474 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 HDXQ7Z353 690 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 EFCAB13Q8IY85 973 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 MAIP1Q8WWC4 291 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 GTF3C6Q969F1 213 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 SERPINB2P05120 415 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 ALDH3A1P30838 453 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 DNA2P51530 1060 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 CHRNDQ07001 517 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 IRAK4Q9NWZ3 460 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 KCNH3Q9ULD8 1083 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 MED23Q9ULK4 1368 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 A0A1W2PRG0 241 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 TNFAIP3P21580 790 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 NOC4LQ9BVI4 516 aaKnown RBP14.15□□□□□ -0.14
USP40-201ENST00000251722 JAG2Q9Y219 1238 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 PCDHB13Q9Y5F0 798 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 SNX14Q9Y5W7 946 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 ASPRV1Q53RT3 343 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 BEND3Q5T5X7 828 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 ARHGEF16Q5VV41 709 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 ZKSCAN3Q9BRR0 538 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 NRBP2Q9NSY0 501 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 CD2APQ9Y5K6 639 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 ERBB3P21860 1342 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 CEP63Q96MT8 703 aa14.15□□□□□ -0.14
USP40-201ENST00000251722 SLC27A3Q5K4L6 730 aa14.15□□□□□ -0.15
USP40-201ENST00000251722 MIER3Q7Z3K6 550 aa14.15□□□□□ -0.15
USP40-201ENST00000251722 NSMCE1Q8WV22 266 aa14.15□□□□□ -0.15
USP40-201ENST00000251722 BCL2L12Q9HB09 334 aa14.15□□□□□ -0.15
USP40-201ENST00000251722 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.15□□□□□ -0.15
USP40-201ENST00000251722 PALM3A6NDB9 673 aaPredicted RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 LAD1O00515 517 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 TMOD1P28289 359 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 IRX5P78411 483 aaPredicted RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 RSPH3Q86UC2 560 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 CCDC125Q86Z20 511 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 CDHR1Q96JP9 859 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 ADD3Q9UEY8 706 aaKnown RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 ARHGEF37A1IGU5 675 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 PDE8BO95263 885 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 SKILP12757 684 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 GPR161Q8N6U8 529 aaKnown RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 SPATA31A3Q5VYP0 1347 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 XPOTO43592 962 aaKnown RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 GAS7O60861 476 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 ATP5DP30049 168 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 BTDP43251 543 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 ICA1Q05084 483 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 CCDC84Q86UT8 332 aaPredicted RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 MLXIPQ9HAP2 919 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 CHST3Q7LGC8 479 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 CCDC26Q8TAB7 109 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 DDX27Q96GQ7 796 aaKnown RBP14.14□□□□□ -0.15
USP40-201ENST00000251722 ROBO2Q9HCK4 1378 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 HEG1Q9ULI3 1381 aa14.14□□□□□ -0.15
USP40-201ENST00000251722 RIOK3O14730 519 aaKnown RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 LACTBP83111 547 aaPredicted RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 SP4Q02446 784 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 DCAF17Q5H9S7 520 aaPredicted RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 ISM2Q6H9L7 571 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 FBXO11Q86XK2 927 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 FAM169AQ9Y6X4 670 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 PAK1Q13153 545 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 DALRD3Q5D0E6 543 aaKnown RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 IFNL3Q8IZI9 196 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 CFBP00751 764 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 TXKP42681 527 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 TFDP1Q14186 410 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 MCM6Q14566 821 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 UBL4BQ8N7F7 174 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 ADPGKQ9BRR6 497 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 TRMT1Q9NXH9 659 aaKnown RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 TSKSQ9UJT2 592 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 RRP15Q9Y3B9 282 aaKnown RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 AKR1B15C9JRZ8 316 aaPredicted RBP14.13□□□□□ -0.15
USP40-201ENST00000251722 PDE6AP16499 860 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 CALCOCO2Q13137 446 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 CFAP58Q5T655 872 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 CABP7Q86V35 215 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 ZNF654Q8IZM8 581 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 DEPTORQ8TB45 409 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 TEKT3Q9BXF9 490 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 KRT5P13647 590 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 ABCB5Q2M3G0 1257 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms