RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KLF18A0A0U1RQI7 1052 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 PDE6AP16499 860 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ST3GAL1Q11201 340 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 DNTTIP2Q5QJE6 756 aaKnown RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 DHX32Q7L7V1 743 aaKnown RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SPC24Q8NBT2 197 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 MS4A4AQ96JQ5 239 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ARMT1Q9H993 441 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 USP25Q9UHP3 1055 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 CPA4Q9UI42 421 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 FLT1P17948 1338 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 A0A087WWV3 80 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 GOLGA8BA8MQT2 603 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 PDCP20941 246 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 SCRN1Q12765 414 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 LRRFIP1Q32MZ4 808 aaKnown RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF512BQ96KM6 892 aaPredicted RBP10.07□□□□□ -0.8
VPS4B-201ENST00000238497 MCM9Q9NXL9 1143 aa10.07□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF646O15015 1829 aaPredicted RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 ESPNB1AK53 854 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 B4E1Z4 1266 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 PRC1O43663 620 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 TDO2P48775 406 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 CTDSPL2Q05D32 466 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 KIF22Q14807 665 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 SAMD1Q6SPF0 538 aaPredicted RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 NUP133Q8WUM0 1156 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 CRNKL1Q9BZJ0 848 aaKnown RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 TM6SF1Q9BZW5 370 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 PTPDC1A2A3K4 754 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 PDHXO00330 501 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 MPHOSPH10O00566 681 aaKnown RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 ZYXQ15942 572 aaKnown RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 ZMYM1Q5SVZ6 1142 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 LRSAM1Q6UWE0 723 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 DRC7Q8IY82 874 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 SDR42E1Q8WUS8 393 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 FEZ1Q99689 392 aa10.06□□□□□ -0.8
VPS4B-201ENST00000238497 RPAP1Q9BWH6 1393 aaPredicted RBP10.06□□□□□ -0.8
VPS4B-201ENST00000238497 PRKAB2O43741 272 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 CTNND1O60716 968 aaKnown RBP10.05□□□□□ -0.8
VPS4B-201ENST00000238497 CYP2C8P10632 490 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 PTPRAP18433 802 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 CMTR1Q8N1G2 835 aaKnown RBP10.05□□□□□ -0.8
VPS4B-201ENST00000238497 ERO1AQ96HE7 468 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 NAPBQ9H115 298 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 DHX36Q9H2U1 1008 aaKnown RBP10.05□□□□□ -0.8
VPS4B-201ENST00000238497 FMNL1O95466 1100 aaPredicted RBP10.05□□□□□ -0.8
VPS4B-201ENST00000238497 ME1P48163 572 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 TTC6Q86TZ1 520 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 HELLSQ9NRZ9 838 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 DACT1Q9NYF0 836 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 RAD21O60216 631 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 MBD4O95243 580 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 LIG1P18858 919 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 HMGCS2P54868 508 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 PPP4CP60510 307 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 ARID3AQ99856 593 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 CENPFP49454 3210 aa10.05□□□□□ -0.8
VPS4B-201ENST00000238497 PRDM1O75626 825 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 BIN2Q9UBW5 565 aaPredicted RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 CTNNA3Q9UI47 895 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF112Q9UJU3 913 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 PHF20L1A8MW92 1017 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 UBE2HP62256 183 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ARHGEF6Q15052 776 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ISM2Q6H9L7 571 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 FASTKD5Q7L8L6 764 aaKnown RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 AMOTL1Q8IY63 956 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 APPBP2Q92624 585 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 HERC5Q9UII4 1024 aaKnown RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 CEP290O15078 2479 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 CXCL11O14625 94 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ADD1P35611 737 aaKnown RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ATP2B2Q01814 1243 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 CSPP1Q1MSJ5 1256 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 SHROOM1Q2M3G4 852 aaPredicted RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 OTOP1Q7RTM1 612 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 FOXP4Q8IVH2 680 aaPredicted RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 LCORLQ8N3X6 602 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 UBE2Q2Q8WVN8 375 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 PHKBQ93100 1093 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 ORC3Q9UBD5 711 aaPredicted RBP10.04□□□□□ -0.8
VPS4B-201ENST00000238497 HPS5Q9UPZ3 1129 aa10.04□□□□□ -0.8
VPS4B-201ENST00000238497 USP17L5A8MUK1 530 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 CAP2P40123 477 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 GTF3C6Q969F1 213 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 AIFM3Q96NN9 605 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 PARK7Q99497 189 aaKnown RBP10.03□□□□□ -0.8
VPS4B-201ENST00000238497 TNMDQ9H2S6 317 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 CABP5Q9NP86 173 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 SERPINB13Q9UIV8 391 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 SLC4A4Q9Y6R1 1079 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 hCG_1642624A0A1W2PR95 340 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 TLR2O60603 784 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 GH2P01242 217 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 ASNSP08243 561 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 CCAR1Q8IX12 1150 aaKnown RBP10.03□□□□□ -0.8
VPS4B-201ENST00000238497 ZNF280CQ8ND82 737 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 NCOA7Q8NI08 942 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms