RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PPP2R5EQ16537 467 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 HHATQ5VTY9 493 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 SMAP1Q8IYB5 467 aaPredicted RBP15.01□□□□□ -0.01
SF3A1-201ENST00000215793 ARHGAP24Q8N264 748 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 STAMQ92783 540 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 TMEM63CQ9P1W3 806 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 SAR1BQ9Y6B6 198 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 PZPP20742 1482 aa15.01□□□□□ -0.01
SF3A1-201ENST00000215793 ALDH1B1P30837 517 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 YWHAEP62258 255 aaKnown RBP15□□□□□ -0.01
SF3A1-201ENST00000215793 IRX5P78411 483 aaPredicted RBP15□□□□□ -0.01
SF3A1-201ENST00000215793 TRIM58Q8NG06 486 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 PTPRTO14522 1441 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 PFKFB2O60825 505 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 CTSWP56202 376 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 SDCCAG8Q86SQ7 713 aaPredicted RBP15□□□□□ -0.01
SF3A1-201ENST00000215793 HAUS7Q99871 368 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 PCDHB13Q9Y5F0 798 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 SH3BP5O60239 455 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 XRCC5P13010 732 aaKnown RBP15□□□□□ -0.01
SF3A1-201ENST00000215793 SND1Q7KZF4 910 aaKnown RBP eCLIP15□□□□□ -0.01
SF3A1-201ENST00000215793 BLZF1Q9H2G9 400 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 A0A1B0GUA9 196 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 RAD51AP2Q09MP3 1159 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 GALNT17Q6IS24 598 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 OTUD6AQ7L8S5 288 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 NLRX1Q86UT6 975 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 MYOCDQ8IZQ8 938 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 BLIDQ8IZY5 108 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 USTQ9Y2C2 406 aa15□□□□□ -0.01
SF3A1-201ENST00000215793 GAS7O60861 476 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 PNOCQ13519 176 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 DLGAP5Q15398 846 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 C2CD5Q86YS7 1000 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 FANCBQ8NB91 859 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 NLRC4Q9NPP4 1024 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 CMA1P23946 247 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 FAM47AQ5JRC9 791 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 TYW1BQ6NUM6 668 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 ZSWIM6Q9HCJ5 1215 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 RNF123Q5XPI4 1314 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 KDRP35968 1356 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 KIAA0556O60303 1618 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 hCG_1642624A0A1W2PR95 340 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 WHAMMP3Q1A5X7 153 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 CCDC62Q6P9F0 684 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 IFNL3Q8IZI9 196 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 EAF2Q96CJ1 260 aaPredicted RBP14.99□□□□□ -0.01
SF3A1-201ENST00000215793 MRRFQ96E11 262 aaKnown RBP14.99□□□□□ -0.01
SF3A1-201ENST00000215793 ZSCAN10Q96SZ4 725 aaPredicted RBP14.99□□□□□ -0.01
SF3A1-201ENST00000215793 PSMB7Q99436 277 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 AMFRQ9UKV5 643 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 P4HA1P13674 534 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 LONRF3Q496Y0 759 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 CEP85LQ5SZL2 805 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 GOLGA5Q8TBA6 731 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 TEKT1Q969V4 418 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 MCUR1Q96AQ8 359 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 VCX3BQ9H321 246 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 HAUS2Q9NVX0 235 aa14.99□□□□□ -0.01
SF3A1-201ENST00000215793 BLMP54132 1417 aaPredicted RBP14.99□□□□□ -0.01
SF3A1-201ENST00000215793 WDR62O43379 1518 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 KRT15P19012 456 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 TCP10Q12799 353 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 UBE2Q2Q8WVN8 375 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 USP28Q96RU2 1077 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 PPFIA4O75335 1185 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 BRD3Q15059 726 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 PDE6AP16499 860 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 KRT71Q3SY84 523 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 MFSD14BQ5SR56 506 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 GKAP1Q5VSY0 366 aaPredicted RBP14.98□□□□□ -0.01
SF3A1-201ENST00000215793 TPH2Q8IWU9 490 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 PFDN4Q9NQP4 134 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 H7C1D1 291 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 TNNI1P19237 187 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 LMNTD2Q8IXW0 634 aa14.98□□□□□ -0.01
SF3A1-201ENST00000215793 BIN2Q9UBW5 565 aaPredicted RBP14.98□□□□□ -0.01
SF3A1-201ENST00000215793 DDX41Q9UJV9 622 aaKnown RBP14.98□□□□□ -0.01
SF3A1-201ENST00000215793 A0A0D9SFI3 127 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 KCNJ18B7U540 433 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 I3L4J1 428 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ZWINTO95229 277 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 HSPD1P10809 573 aaKnown RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 PCP11498 1178 aaKnown RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 KCNJ12Q14500 433 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 GNPTABQ3T906 1256 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 SRGAP1Q7Z6B7 1085 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 C17orf53Q8N3J3 647 aaPredicted RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 NSMCE1Q8WV22 266 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 EDC3Q96F86 508 aaKnown RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 USP40Q9NVE5 1235 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ZMYM6O95789 1325 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ARHGAP44Q17R89 818 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ARMCX3Q9UH62 379 aaPredicted RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 MTMR6Q9Y217 621 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 KRT19P08727 400 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ERCC3P19447 782 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 RBM6P78332 1123 aaKnown RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 DENND2CQ68D51 928 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 500 ms